View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5123_low_2 (Length: 281)
Name: NF5123_low_2
Description: NF5123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5123_low_2 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 26085731 - 26085453
Alignment:
| Q |
3 |
aagtactgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacaaaac |
102 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
26085731 |
aagtactgaatatctgcgctcaaactgaccacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaac |
26085632 |
T |
|
| Q |
103 |
taccatttcaacctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactc |
202 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085631 |
taccatttcaatctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactc |
26085532 |
T |
|
| Q |
203 |
atatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26085531 |
atatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttctattttcctaatgacttct |
26085453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 26056494 - 26056216
Alignment:
| Q |
3 |
aagtactgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacaaaac |
102 |
Q |
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|||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
26056494 |
aagtactgaatatctgtgctcaaactgacaacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaac |
26056395 |
T |
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| Q |
103 |
taccatttcaacctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactc |
202 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26056394 |
ttccatttcaatctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacccttgatgaagaacagccctcaatctctactc |
26056295 |
T |
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| Q |
203 |
atatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
26056294 |
atatcaaggatcattaccactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagacttct |
26056216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 26068150 - 26067878
Alignment:
| Q |
9 |
tgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacaaaactaccat |
108 |
Q |
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||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||| |
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| T |
26068150 |
tgaatatatgtgctcaaactgaccacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaacttccat |
26068051 |
T |
|
| Q |
109 |
ttcaacctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatca |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26068050 |
ttcaatctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatca |
26067951 |
T |
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| Q |
209 |
aggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
26067950 |
aggatcattaccactgtaatcattggagttcttactggatgcatcatagttttcttttttcctaaagacttct |
26067878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 26112067 - 26111790
Alignment:
| Q |
9 |
tgaatatctgtgctcaaactcaccacccaattcttcatttcttaatta---accctccaaaa--cttcacaaccctatataaccagaactaaacaaaact |
103 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | | ||||| ||||||||||||||||||| |||||||||| |
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| T |
26112067 |
tgaatatctgtgctcaaactgaccacccaattcttcatttcttaattattaaccctcctataagcttcagaaccctatataaccagaacaaaacaaaact |
26111968 |
T |
|
| Q |
104 |
accatttcaacctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactca |
203 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26111967 |
tccatttcaatctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactca |
26111868 |
T |
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| Q |
204 |
tatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26111867 |
tatcaaggatcattaccactgtaatcattggagttcttattggatgcatcatagttttcttttttcctaatgacttct |
26111790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 26129024 - 26128744
Alignment:
| Q |
3 |
aagtactgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaa--cttcacaaccctatataaccagaactaaacaaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||| |
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| T |
26129024 |
aagtactgaatacatgtgctcaaactgaccacccaattcttcatttcttaattaaccctcctataagcttcagaaccctatataaccagaactaaacaat |
26128925 |
T |
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| Q |
101 |
actaccatttcaacctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctac |
200 |
Q |
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||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| | |||||| |
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| T |
26128924 |
actaccatttcaatctcaatctttgaggtggtggtggatacaatgattgagcacagagaaagagaaggacccttgatgaagaacaacccttattctctaa |
26128825 |
T |
|
| Q |
201 |
tcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26128824 |
gcatatcaaagattgttaccgctgtaatcatagtagttcttactggatgcatcatagttttcttttttcctaatgacttct |
26128744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 26121482 - 26121317
Alignment:
| Q |
116 |
tcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaatctctactcatatcaaggatca |
215 |
Q |
| |
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|||||||||||| | ||||||||||||||||||| || ||||||||||||||||| ||||||||||||| | |||| |||||||||||||||| ||| |
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| T |
26121482 |
tcagtctttgaggtagtggtggatacaatgattgggctcagagaaagagaaggacgcttgatgaagaacaactctcattctctactcatatcaataatcg |
26121383 |
T |
|
| Q |
216 |
ttaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| || |||||| ||||||||||||||||| |
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| T |
26121382 |
ttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatgacttct |
26121317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 281
Target Start/End: Complemental strand, 26038497 - 26038311
Alignment:
| Q |
95 |
aacaaaactaccatttcaacctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagagaaggacctttgatgaagaacagccctcaat |
194 |
Q |
| |
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|||||||||||||| |||| ||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||| || ||| |||| |||||| | |
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| T |
26038497 |
aacaaaactaccatctcaatctcagtctttgaggtggtggtagctacaatgattgggcgcagagaaagagaaggacccttaatgcgaaacaaccctcatt |
26038398 |
T |
|
| Q |
195 |
ctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcttttttcctaatgacttct |
281 |
Q |
| |
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|||||| || |||||||||| |||| ||||| | ||||| |||||| |||||||||| ||| ||||||||||||||||| ||||| |
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| T |
26038397 |
ctctacgcaaatcaaggatcgttactgctgtagtaattggtgttcttattggatgcatcttagctttcttttttcctaatggcttct |
26038311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 26049083 - 26048989
Alignment:
| Q |
9 |
tgaatatctgtgctcaaactcaccacccaattcttcatttcttaattaaccctccaaaacttcacaaccctatataaccagaactaaacaaaact |
103 |
Q |
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||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
26049083 |
tgaatatatgtgctcaaactgaccacccaattctccatttcttaattaaccctccaaagcttcaaaaccctatataaccagaacaaaacaaaact |
26048989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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