View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5124-Insertion-1 (Length: 471)
Name: NF5124-Insertion-1
Description: NF5124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5124-Insertion-1 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 471
Target Start/End: Complemental strand, 503698 - 503237
Alignment:
| Q |
7 |
acttttcacccatgaggtccctttggtagatattgacaaggcatttgagttattgaaagatcccacttgtgtcaaagttgttatcaagatgtgatatctt |
106 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503698 |
acttttcacccatgaggtccctttggttgatattgacaaagcatttgagttattgaaagatcccacttgtgtcaaagttgttatcaagatgtgatatctt |
503599 |
T |
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| Q |
107 |
tctttccatatcccagcatatttcaataaactctctcaagaaaatattagagatgttatttcggcttttttaaaattagaagttaatgtactgatcataa |
206 |
Q |
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| T |
503598 |
tctttccat--cccagcatatttcaataaactctc--aagaaaatattagagatgttatttcagcttttttaaaattagaaattaatgtactgatcatcg |
503503 |
T |
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| Q |
207 |
ttcttgtggtttctctattctatggagaatgatgttattatgtgatcacaatcaatttctctcttttactcttgtgaaaatatgctttctcttc-nnnnn |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
503502 |
ttcttgtggtttctctattctatggagaatgatgttattatgtgatcacaatcaatttctctcttttattcttatgaaaatatgctttctcttctttttt |
503403 |
T |
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| Q |
306 |
nnaatgacatgctttctcttctaaacggcaacatcccctat-ttggatcaaaatagcttcacaaaatctaaccttatcctcctaaaatccacagaaaatt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
503402 |
ttaatgacatgctttctcttctaaacggcaacatcccctatattggatcaaaatagcttcacaaaatctaaccttatccccctaaaatccacagaaaatt |
503303 |
T |
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| Q |
405 |
tctcttcccctaaagagaattgctcactcccccgcgtgacttaagtcatgttcgattagcatcggca |
471 |
Q |
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| T |
503302 |
tctcttctcctaaagagaattgctcactcccccgcgtgacttaagtcatgttcga-tagcatcggca |
503237 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 20050749 - 20050653
Alignment:
| Q |
11 |
ttcacccatgaggtccctttggtagatattgacaaggcatttgagttattgaaagatcccacttgtgtcaaagttgttatcaagatgtgatatcttt |
107 |
Q |
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|||||||||||||| || |||| |||||| |||| ||||||||| || |||| | || | |||||| |||||||| |||||||||||| |||||| |
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| T |
20050749 |
ttcacccatgaggtaccattggcagatataaacaaagcatttgagataatgaagcaacctaattgtgtgaaagttgtaatcaagatgtgaaatcttt |
20050653 |
T |
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