View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5124_high_12 (Length: 311)
Name: NF5124_high_12
Description: NF5124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5124_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 29404860 - 29405152
Alignment:
| Q |
19 |
tggacatcatcaattcccattccaacgtcagacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaattcagttcgagtcc |
118 |
Q |
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| T |
29404860 |
tggacatcatcaattcccattccaacatccgacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaactcagttcgagtcc |
29404959 |
T |
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| Q |
119 |
aaactcattacgactcagacatgtcaacacaccaagtagatgacctcgatccatcagatgaatccaatgctccagctagcaggccaaaatccactcgtgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29404960 |
aaactcattacgactcagacatgtcaacacaccaagtagatgagctcgatccatcagatgaatccaatgctccagctagcaggccaaaattcactcgtgg |
29405059 |
T |
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| Q |
219 |
gagctcaactcggttcacggcagattcccctgagaattccggcggaggaaatctacgaccacaactatcacgcaagaattccaccaacgtgtc |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29405060 |
gagctcaactcggttcacggcagattcctctgagaattctggcggaggaaatctacgaccacaactatcacgcaagaattccaccaacgtgtc |
29405152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 19911952 - 19911822
Alignment:
| Q |
19 |
tggacatcatcaattcccattccaacgtcagacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaattcagttcgagtcc |
118 |
Q |
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||||||||| | |||| |||||||| ||||| || |||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||| ||| |
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| T |
19911952 |
tggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaatcc |
19911853 |
T |
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| Q |
119 |
aaactcattac---gactcagacatgtcaac |
146 |
Q |
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| T |
19911852 |
aaactcaccacgatgactcagacatgtcaac |
19911822 |
T |
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