View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5124_high_13 (Length: 302)
Name: NF5124_high_13
Description: NF5124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5124_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 49060677 - 49060963
Alignment:
| Q |
3 |
gtgcagcaccacagaccaaacaacccgaggcttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcctcttcatcctga |
102 |
Q |
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| T |
49060677 |
gtgcagctccacagaccaaacaacccgaggcttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcgtcttcatcctga |
49060776 |
T |
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| Q |
103 |
tcctttcttttcttagtcagctttccattttcatctgaattttctgctcctgcagatcttagtccactgccactgtcagaagtagttttgtctggtttac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060777 |
tcctttcttttcttagtcagctttccattttcatctgaattttctgctcctgcagatcttagtccactgccactgtcagaagtagttttgtctggtttac |
49060876 |
T |
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| Q |
203 |
tggttttgtttttctcctttggatcaggcttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
289 |
Q |
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| T |
49060877 |
tggttttgtttttctcctttggatcagacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
49060963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 47274398 - 47274489
Alignment:
| Q |
13 |
acagaccaaacaacccgaggcttcttctgagctgatgggtcctcattgtcattaccattctctttatcctcgtcttcctcttcatcctgatc |
104 |
Q |
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| T |
47274398 |
acagaccaaacaacagggggcttcttctgagctcatgggtcctcattgtcatgaccattctctttatcctcatctttgtcttcatcctgatc |
47274489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 47275104 - 47275162
Alignment:
| Q |
231 |
cttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
289 |
Q |
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| T |
47275104 |
cttcttcttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtt |
47275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 47280796 - 47280847
Alignment:
| Q |
238 |
ttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
289 |
Q |
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|||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
47280796 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
47280847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 47275044 - 47275103
Alignment:
| Q |
3 |
gtgcagcaccacagaccaaacaacccgaggcttcttctgagctgatgggtcctcattgtc |
62 |
Q |
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| T |
47275044 |
gtgcagctccacagaccaaacagactgggacttcttctgagctgataggtcctcattgtc |
47275103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 48870039 - 48870087
Alignment:
| Q |
16 |
gaccaaacaacccgaggcttcttctgagctgatgggtcctcattgtcat |
64 |
Q |
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||||||||||| |||||||||||||| |||| ||| || |||||||||| |
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| T |
48870039 |
gaccaaacaactcgaggcttcttctgtgctgttggatcatcattgtcat |
48870087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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