View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5124_high_3 (Length: 355)
Name: NF5124_high_3
Description: NF5124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5124_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 18931237 - 18931566
Alignment:
| Q |
9 |
accacagatgctcccgttattaaccctcgcactcatccaaaattcttttacaagctcggcgtagataggtttcttttctgcatagaaatattccatccaa |
108 |
Q |
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|||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18931237 |
accatagatgctcccattatcaacccttgcactcatccaaaattcttttacaagctcggtgtagataggtttcttttctgcatagaaatattccatccaa |
18931336 |
T |
|
| Q |
109 |
cccatatttacaaaactctctctgaagtcgaattcatttgcagcaagatcatataaatcaacccttggttccagtagaacttctagttcttcaagtctca |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18931337 |
cccatatttacaaaactcactctgaagtcgaattcatttgcagcaagatcatataaatcaacccttggttccagtagaacttctagttcttcaagtctca |
18931436 |
T |
|
| Q |
209 |
tattagtcatggtcacaagatacttttcactgactgagaaaaccctattttctctcaacttatatattgtggaagaaagggtttggcaacgttgtttgtt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18931437 |
tattagtcatggtcacaagatacttttcaccgactgag-aaagcctaatttctctcaagttatatactgtggaagaaagggtttggcaacgttgtttgtt |
18931535 |
T |
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| Q |
309 |
ccttcaacagcaagctatatatataagtagt |
339 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
18931536 |
ccttcaacagcaagctatatatataagtagt |
18931566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 36845545 - 36845751
Alignment:
| Q |
9 |
accacagatgctcccgttattaaccctcgcactcatccaaaattcttttacaagctcggcgtagataggtttcttttctgcatagaaatattccatccaa |
108 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||| |
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| T |
36845545 |
accacagatgctcccattatcaacccttgcactcatccaaaattcttttacaagctcggtgtagataggtttcttttctgcacagaagtattccatccaa |
36845644 |
T |
|
| Q |
109 |
cccatatttacaaaactctctctgaagtcgaattcatttgcagcaagatcatataaatcaacccttggttccagtagaacttctagttcttcaagtctca |
208 |
Q |
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||||||| |||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
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| T |
36845645 |
cccatatccacaaaattttctctgaagtcaaattcatttgcagcaagatcatataggtcaacccttggttccagtagaacttctagttcttcaaattcca |
36845744 |
T |
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| Q |
209 |
tattagt |
215 |
Q |
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||||||| |
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| T |
36845745 |
tattagt |
36845751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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