View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5124_high_5 (Length: 353)

Name: NF5124_high_5
Description: NF5124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5124_high_5
NF5124_high_5
[»] chr8 (6 HSPs)
chr8 (13-294)||(12587528-12587811)
chr8 (247-294)||(27324864-27324911)
chr8 (13-62)||(27324642-27324691)
chr8 (247-294)||(26647250-26647297)
chr8 (248-290)||(34054155-34054197)
chr8 (248-285)||(29283695-29283732)
[»] chr6 (1 HSPs)
chr6 (13-294)||(6900343-6900628)
[»] chr7 (3 HSPs)
chr7 (13-293)||(22969821-22970102)
chr7 (106-294)||(22962526-22962718)
chr7 (246-297)||(21312015-21312066)
[»] chr1 (1 HSPs)
chr1 (13-293)||(21880523-21880804)
[»] chr3 (2 HSPs)
chr3 (13-290)||(49603075-49603360)
chr3 (250-296)||(36840782-36840828)
[»] chr4 (2 HSPs)
chr4 (250-294)||(41451213-41451257)
chr4 (247-293)||(53232830-53232876)
[»] chr5 (2 HSPs)
chr5 (247-294)||(3293738-3293785)
chr5 (247-294)||(10711679-10711726)
[»] scaffold0197 (1 HSPs)
scaffold0197 (246-290)||(26288-26332)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 12587528 - 12587811
Alignment:
Q  13 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataa 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  12587528 cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacctgtgttgtgttggtgtaaatcagaa 12587627  T
Q  113 ttgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagc---agtgggtggggtgttattagca 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  12587628 ttgtgttagctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca 12587727  T
Q  210 gtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    ||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587728 gtatatgtatatgtata-aaaaaaaaaaatagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 12587811  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 27324864 - 27324911
Alignment:
Q  247 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||    
T  27324864 tttgtgcatgtaggagcccccacaatcatgtgagtggctccgcccctg 27324911  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27324642 - 27324691
Alignment:
Q  13 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtg 62  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  27324642 cagagagggagtttgtttgttcaccgtgagaaagaaagaaagaaaacgtg 27324691  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 26647297 - 26647250
Alignment:
Q  247 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
T  26647297 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 26647250  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 34054197 - 34054155
Alignment:
Q  248 ttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 290  Q
    ||||||||| ||||||||||||| || ||||||||||||||||    
T  34054197 ttgtgcaggtaggagcccccacactcttgtgagtggctccgcc 34054155  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 29283695 - 29283732
Alignment:
Q  248 ttgtgcaggcaggagcccccacaatcatgtgagtggct 285  Q
    ||||||||||||||||||||||| || |||||||||||    
T  29283695 ttgtgcaggcaggagcccccacactcttgtgagtggct 29283732  T

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Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 6900628 - 6900343
Alignment:
Q  13 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataa 112  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||| ||    
T  6900628 cagagagggtgtttgtttgttcactgtaagaaagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaa 6900529  T
Q  113 ttgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagc---agtgggtggggtgttattagca 209  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  6900528 ttgtgttaactgggccttgggattgggcagttgggctactgagtgggagtgtttgatattttagaaattgctagcaatagtgggtggggtgttattagca 6900429  T
Q  210 gtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    |||||||||||||||||| |          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6900428 gtatatgtatatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 6900343  T

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Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 22970102 - 22969821
Alignment:
Q  13 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaa----ccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc 108  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||||| | ||||||    
T  22970102 cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatc 22970003  T
Q  109 ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagc---agtgggtggggtgttatt 205  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||    
T  22970002 agaattgtgttagctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 22969903  T
Q  206 agcagtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 293  Q
    |||||||||||| |||  | | |          |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22969902 agcagtatatgtttataaaaaaa------aatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct 22969821  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 294
Target Start/End: Complemental strand, 22962718 - 22962526
Alignment:
Q  106 atcataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgct--agc---agtgggtggggtg 200  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||  |||   |||||||||||||    
T  22962718 atcagaattgtgttagctgggctttgggattgggcagttgggctattgggtgagagtgtttgatattttagaaattactaaagcaatagtgggtggggtg 22962619  T
Q  201 ttattagcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    ||||||||||||||  ||||||||||| |          |||| || |||||||||||||||||||||||||||||||||||||||| |||||||    
T  22962618 ttattagcagtata--tatatgtatataaaaaaaaaaattagaaaaatttgtgcaggcaggagcccccacaatcatgtgagtggctctgcccctg 22962526  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 21312015 - 21312066
Alignment:
Q  246 gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgatt 297  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||| ||||||    
T  21312015 gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactgatt 21312066  T

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Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 21880523 - 21880804
Alignment:
Q  13 cagagagggagtttgtttgttcactatgagaa----agaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc 108  Q
    ||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||    
T  21880523 cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatc 21880622  T
Q  109 ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagc---agtgggtggggtgttatt 205  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||    
T  21880623 agaattgtgttagctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 21880722  T
Q  206 agcagtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 293  Q
    |||||||||||| |||  | | |          |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21880723 agcagtatatgtttataaaaaaa------aatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct 21880804  T

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Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 49603075 - 49603360
Alignment:
Q  13 cagagagggagtttgtttgttcactatgagaaaga----aagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc 108  Q
    ||||||||||||||||||||||||| |||||||||    |||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||    
T  49603075 cagagagggagtttgtttgttcactgtgagaaagagagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatc 49603174  T
Q  109 ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagc---agtgggtggggtgttatt 205  Q
    | ||||||||| | |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||   ||| ||||||||||||||    
T  49603175 agaattgtgttagttgggccttgggattgggcagttaggctactgggtaggagtgtttgatattttagaaattgttagcaatagtaggtggggtgttatt 49603274  T
Q  206 agcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 290  Q
    |||||||||| ||||||||||| |          |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  49603275 agcagtatatatatatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccgcaatcatgtgagtggctccgcc 49603360  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 36840782 - 36840828
Alignment:
Q  250 gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgat 296  Q
    ||||||||| ||||||||||||| |||||||||| |||||| |||||    
T  36840782 gtgcaggcacgagcccccacaataatgtgagtggttccgcctctgat 36840828  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 41451213 - 41451257
Alignment:
Q  250 gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  41451213 gtgcaggcaggagcccccacactgatgtgagtggctccgcccctg 41451257  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 53232830 - 53232876
Alignment:
Q  247 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 293  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||||    
T  53232830 tttgtgcaggcaggagcccacacaagcttgtgtgtggctccgcccct 53232876  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 3293785 - 3293738
Alignment:
Q  247 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
T  3293785 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 3293738  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 10711679 - 10711726
Alignment:
Q  247 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 294  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
T  10711679 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 10711726  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 26288 - 26332
Alignment:
Q  246 gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 290  Q
    |||||||||||||||||||| ||||| | |||| |||||||||||    
T  26288 gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcc 26332  T

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