View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5124_low_1 (Length: 567)
Name: NF5124_low_1
Description: NF5124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5124_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 12830590 - 12830939
Alignment:
| Q |
20 |
caattactataattataaaccaaaatatctttaacttttggtctttcttgctataaaattaggttaaaaagaaatgcgttaaaaagaaatcaggagcagc |
119 |
Q |
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| T |
12830590 |
caattactattattataaaccaaaatatctttaacttttggtctttcttgctatgaaattaggttaaaaagaaat---------------caggagcagc |
12830674 |
T |
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| Q |
120 |
ctgaaccacgtacaaaaatttaggtcatagtgaccctagggtttggtaatcctaaagcatccctat------ccagtaaacgtaaagtaaaagcaggtgg |
213 |
Q |
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| T |
12830675 |
ctgaaccacgtacaaaaatttaggtcatagtgaccctagagtttggtaatcttaaagcatccctatatatatccagtaaatgtaaagtaaaagccggtgg |
12830774 |
T |
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| Q |
214 |
cgtcgcccaccactgagaagaatgaggggcaagactttgaccattgttggctaatgcatcaaccacgttaaaagtagaaagnnnnnnnnctatgaacata |
313 |
Q |
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| T |
12830775 |
cgtcgcccaccactgagaagaatgaggggcaagactttgaccattcttggctaatgcatcagccacatttaaagtagaaagaaaataaactatgaacata |
12830874 |
T |
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| Q |
314 |
acctaaatttagagacacgcacatcttaactaactatatagaatctcattgaataaattacggtg |
378 |
Q |
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| T |
12830875 |
acctaaatttagagacacgcacatcttaactaactatatagaatcttattgaataaattacggtg |
12830939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 562
Target Start/End: Original strand, 12831091 - 12831123
Alignment:
| Q |
530 |
gtttcatataccttctcctgggcctttgcttct |
562 |
Q |
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| T |
12831091 |
gtttcatataccttctcctgggcctttgcttct |
12831123 |
T |
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