View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5125-Insertion-1 (Length: 880)

Name: NF5125-Insertion-1
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5125-Insertion-1
NF5125-Insertion-1
[»] chr7 (5 HSPs)
chr7 (8-880)||(22787440-22788310)
chr7 (392-432)||(40078664-40078704)
chr7 (648-705)||(9939417-9939474)
chr7 (648-705)||(10027635-10027692)
chr7 (648-705)||(36698735-36698792)
[»] chr8 (2 HSPs)
chr8 (392-474)||(26273981-26274063)
chr8 (648-705)||(45193850-45193907)
[»] chr1 (3 HSPs)
chr1 (392-483)||(43034330-43034416)
chr1 (392-472)||(42947853-42947933)
chr1 (648-723)||(496962-497037)
[»] chr5 (1 HSPs)
chr5 (394-443)||(35257333-35257382)
[»] chr4 (6 HSPs)
chr4 (639-718)||(29800510-29800589)
chr4 (409-472)||(37951616-37951679)
chr4 (406-480)||(17073046-17073120)
chr4 (648-705)||(25887276-25887333)
chr4 (648-705)||(29690925-29690982)
chr4 (648-705)||(48694727-48694784)
[»] chr3 (2 HSPs)
chr3 (652-705)||(35656476-35656529)
chr3 (393-432)||(1550449-1550488)
[»] chr2 (3 HSPs)
chr2 (657-705)||(17388037-17388085)
chr2 (648-705)||(26646370-26646428)
chr2 (603-644)||(18483675-18483716)
[»] scaffold0369 (1 HSPs)
scaffold0369 (648-705)||(14390-14447)


Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 880
Target Start/End: Original strand, 22787440 - 22788310
Alignment:
Q  8 ggtggaactcctcctagtcctccacattgtagcttaccaaagcaatcacctgttagacagtggccgtttccgtcgttgtcgaaagtgcaaccttgtcttc 107  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22787440 ggtggaactcctcctaatcctgcacattgtagtttaccaaagcaatcacctgttagacagtggccgtttccgtcgttgtcgaaagtgcagccttgtcttc 22787539  T
Q  108 cccaaattcttcccgaccatttttcggctacatctaatactacttcgtcgccgctacctagatgaaatccgccatcttttggtgtttgttgccctgatcc 207  Q
    |||| |||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||    
T  22787540 cccatattcttcctgaccatttttcttgtacatctaatactacttcgtcgccgctacctagatgaaatccaccatcttttggtgtctgttgccctgagcc 22787639  T
Q  208 tcctagtatccctggccatacactttctccacaattgttcactagaattagttgagcaccatctgcatcaaacaatatataaatgcttaggaatgtaacg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||    
T  22787640 tcctagtatccctggccatacactttctccacaattgttcactagaattagttgagcaccatctgcatcaaataatagataaatgtttagaaatgtaacg 22787739  T
Q  308 tttaatactaaagattcttagatagaaacatataagagcatttctatgagtagttagtaaaaaagtttgatattataaccgtctatgatttgttatgtat 407  Q
     ||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||| ||| | |||||||| ||||||||||    
T  22787740 cttaataccaaagattcttagatagcaacatataagagcatttccatgagtagctagtaaaaaaggttgatattttaaacatctatgatctgttatgtat 22787839  T
Q  408 gtgcatataatatcaactattgattcgattatcaactgttgatattactcactttactctttaaattaaattgttcttcactttagagaactatgatcag 507  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22787840 gtgcatataatatcaactattgattcgtttatcaactgttgatattacttactttactctttaaattaaattgttcttcactttagagaactatgattag 22787939  T
Q  508 tcatggccgtcattctaatagttgaacc-aggacctcaacaattataccaccgagctcaaccactacgccatatgttttcagcgttgcacattttgcaac 606  Q
    |||||| |||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||    
T  22787940 tcatggtcgtcgttctgatagttgaacccaggacctcaacgattataccaccgagctcaaccactacgccat--gttttcagcgttgcacatttcacaac 22788037  T
Q  607 gctactagtatatatcaatattttacatgcataatatatataaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacctt 706  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22788038 gctactagtatatatctatattttacatgcataatatatataaaaatattttgggtcccaaaattttggaggtccaactctatacaactgtttgcacctt 22788137  T
Q  707 cctaaagacggctctgaaactagtcaaacatgatcttgactcttgaaactaactaataaacaaacacataatactctttgc-attggctctgaaaatata 805  Q
    |  | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||    
T  22788138 cacagagacggctctgaaactagtcaaacatgatcttgactcttaaaactaactaataaacaaacacataagactctttgccattggctctgaaaaaata 22788237  T
Q  806 taacctttgttatactaaatgtattctaatttttggcttggtgggc-tttattacaaatagaaaaataatcaatgt 880  Q
    |||| |||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||    
T  22788238 taac-tttgttatactaaatgtattctaatttttg-cttg-tggacatttattacaaatagaaaaataatcaatgt 22788310  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 40078704 - 40078664
Alignment:
Q  392 atgatttgttatgtatgtgcatataatatcaactattgatt 432  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  40078704 atgatttgttatgtatgtgtatataatatcaaccattgatt 40078664  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 9939417 - 9939474
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  9939417 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 9939474  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 10027692 - 10027635
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  10027692 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 10027635  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 36698735 - 36698792
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  36698735 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 36698792  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 474
Target Start/End: Complemental strand, 26274063 - 26273981
Alignment:
Q  392 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattactcactttactctttaaatt 474  Q
    ||||||||||||| ||| ||||||||||| ||| |||| || | |||||||| |||| ||||||||  |||||||||||||||    
T  26274063 atgatttgttatgcatgcgcatataatattaaccattggtttgtttatcaacggttggtattactcgttttactctttaaatt 26273981  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 45193850 - 45193907
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  45193850 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 45193907  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 43034416 - 43034330
Alignment:
Q  392 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattactcactttactctttaaattaaattgttc 483  Q
    ||||||||||||||  ||||||||||||||||   |||||| | |||  ||| |||||||||||||||||||||||||||| | ||||||||    
T  43034416 atgatttgttatgt--gtgcatataatatcaa---ttgatttgtttaaaaacagttgatattactcactttactctttaaagtgaattgttc 43034330  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 42947853 - 42947933
Alignment:
Q  392 atgatttgttatgtatgtgcatataatatcaactattgattcgattatcaactgttgatattactcactttactctttaaa 472  Q
    |||||||||| |  || |||||||||||||||| ||||||| | |||||||| |||||||||||||  |||||||| ||||    
T  42947853 atgatttgttttacatttgcatataatatcaaccattgatttgtttatcaacggttgatattactcgttttactctctaaa 42947933  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 648 - 723
Target Start/End: Original strand, 496962 - 497037
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcaccttcctaaagacggctctga 723  Q
    |||||||||||||| |||||||||  ||||| |||||||||||||  ||||||||||| ||||  |||||| ||||    
T  496962 aaaaatattttgggccccaaaattggggaggcccaactctatagagttgtttgcacctccctagggacggccctga 497037  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 35257333 - 35257382
Alignment:
Q  394 gatttgttatgtatgtgcatataatatcaactattgattcgattatcaac 443  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||    
T  35257333 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaac 35257382  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 639 - 718
Target Start/End: Original strand, 29800510 - 29800589
Alignment:
Q  639 aatatatataaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcaccttcctaaagacggc 718  Q
    |||| ||| |||||||||||||  || ||||||  ||||| |||||||||||||||||||||||| | | ||||||||||    
T  29800510 aataaataaaaaaatattttggaccctaaaattggggaggcccaactctatagaactgtttgcacatccttaaagacggc 29800589  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 37951616 - 37951679
Alignment:
Q  409 tgcatataatatcaactattgattcgattatcaactgttgatattactcactttactctttaaa 472  Q
    |||||||| ||||||| | ||||| | |||||||| ||||||||||||||||||||||| ||||    
T  37951616 tgcatatattatcaaccagtgatttgtttatcaacagttgatattactcactttactctctaaa 37951679  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 17073046 - 17073120
Alignment:
Q  406 atgtgcatataatatcaactattgattcgattatcaactgttgatattactcactttactctttaaattaaattg 480  Q
    ||||||||||||||||||| | ||||  | ||||| | |||||||||| ||||||||||||| | || |||||||    
T  17073046 atgtgcatataatatcaacaactgatatgtttatcgaatgttgatatttctcactttactctctgaagtaaattg 17073120  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 25887276 - 25887333
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  25887276 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 25887333  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Original strand, 29690925 - 29690982
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  29690925 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 29690982  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 48694784 - 48694727
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  48694784 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 48694727  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 705
Target Start/End: Original strand, 35656476 - 35656529
Alignment:
Q  652 atattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||| |||||||||  ||||||||| ||||||||| ||||||||||||    
T  35656476 atattttgggccccaaaattggggaggtccagctctatagagctgtttgcacct 35656529  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 432
Target Start/End: Original strand, 1550449 - 1550488
Alignment:
Q  393 tgatttgttatgtatgtgcatataatatcaactattgatt 432  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  1550449 tgatttgttatgcatgtgcatataatatcaaccattgatt 1550488  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 705
Target Start/End: Original strand, 17388037 - 17388085
Alignment:
Q  657 ttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    ||||| |||||||||  ||||||||||||||||||| ||||||||||||    
T  17388037 ttgggccccaaaattgaggaggtccaactctatagagctgtttgcacct 17388085  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 26646428 - 26646370
Alignment:
Q  648 aaaaatattttggg-tcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| ||||||||||  ||||| ||| ||||||||| ||||||||||||    
T  26646428 aaaaatattttgggctcccaaaattggggaggcccagctctatagagctgtttgcacct 26646370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 644
Target Start/End: Original strand, 18483675 - 18483716
Alignment:
Q  603 caacgctactagtatatatcaatattttacatgcataatata 644  Q
    |||||||| |||||||||| |||||||||||||||| |||||    
T  18483675 caacgctaatagtatatattaatattttacatgcattatata 18483716  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 705
Target Start/End: Complemental strand, 14447 - 14390
Alignment:
Q  648 aaaaatattttgggtcccaaaattttggaggtccaactctatagaactgtttgcacct 705  Q
    |||||||||||||| |||||||||  ||||| ||| |||| |||| ||||||||||||    
T  14447 aaaaatattttgggccccaaaattggggaggcccagctctgtagagctgtttgcacct 14390  T

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