View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-12 (Length: 180)
Name: NF5125-Insertion-12
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 9e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 9e-78
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 1538493 - 1538668
Alignment:
| Q |
5 |
acaaaagttacataagctaaatcaaacaaaagtgtttaatatcataatatgcaggaaaatcatatagaggaaaacccttaatcttgagaaatcaaaggtt |
104 |
Q |
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| T |
1538493 |
acaaaagttagataagctaaatcaaacaaaagtgtttaatatcataatatgcaggaaaatcatatagaggaaaacccttaatcttgagaaatcaaaggtt |
1538592 |
T |
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| Q |
105 |
gaaaagatgtttcagatgtctgccaatcnnnnnnncttgaaggttcattgtcttcgaaattaacacagcacataat |
180 |
Q |
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| T |
1538593 |
gaaaagatgtttcagatgtctgccaatcaaaaaaacttgaaggttcattgtcttcgaaattaacagagcacataat |
1538668 |
T |
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Target: chr1; HSP #2
Raw Score: 147; E-Value: 9e-78
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 17768540 - 17768715
Alignment:
| Q |
5 |
acaaaagttacataagctaaatcaaacaaaagtgtttaatatcataatatgcaggaaaatcatatagaggaaaacccttaatcttgagaaatcaaaggtt |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768540 |
acaaaagttagataagctaaatcaaacaaaagtgtttaatatcataatatgcaggaaaatcatatagaggaaaacccttaatcttgagaaatcaaaggtt |
17768639 |
T |
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| Q |
105 |
gaaaagatgtttcagatgtctgccaatcnnnnnnncttgaaggttcattgtcttcgaaattaacacagcacataat |
180 |
Q |
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| T |
17768640 |
gaaaagatgtttcagatgtctgccaatcaaaaaaacttgaaggttcattgtcttcgaaattaacagagcacataat |
17768715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 44177954 - 44178018
Alignment:
| Q |
5 |
acaaaagttacataagctaaatcaaacaaaagtgtttaatatcataatatgcaggaaaatcatat |
69 |
Q |
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||||||||||||| | |||| |||||||||||||| |||||| ||||||||||||| |||||| |
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| T |
44177954 |
acaaaagttacatcaactaataaaaacaaaagtgtttgatatcacaatatgcaggaaactcatat |
44178018 |
T |
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