View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-13 (Length: 270)
Name: NF5125-Insertion-13
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-13 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 31034352 - 31034601
Alignment:
| Q |
21 |
aacaactttgcatacacaacgagtagacacatattgggattaatacaaaacattgtcggggattaaataaagaaaagattaaattcaaacaaaccaacaa |
120 |
Q |
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| T |
31034352 |
aacaactttgcatgcacaacgagtagacacatattgggattaatacaaaacattgtcggggattaaataaagaaaagattaaattcaaacaaaccaacaa |
31034451 |
T |
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| Q |
121 |
atcacataagttaaaaattgatgctatatgttgtagctcacaatcttacacacaccaacttatcaggtactaatccttgtatcaaaatcatttcaatgtg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31034452 |
atcacataagttaaaaattgatgctatatgttgtagctcacaatcttacacacaccatcttatcaggtactaatccttgtatcaaaatcatttcaatgtg |
31034551 |
T |
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| Q |
221 |
atttggaagaagagcaaagttgaagctcctaaatgattaatgtaagctta |
270 |
Q |
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| T |
31034552 |
atttggaagaagagcaaagttgaagctcctaaatgattaatgtaagctta |
31034601 |
T |
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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 30510 - 30478
Alignment:
| Q |
7 |
aaccagtatgttataacaactttgcatacacaa |
39 |
Q |
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| T |
30510 |
aaccagtatgttataacaactttgcatgcacaa |
30478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 38824544 - 38824508
Alignment:
| Q |
234 |
gcaaagttgaagctcctaaatgattaatgtaagctta |
270 |
Q |
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| T |
38824544 |
gcaaagttgaagctctaaaatgattaatgtaagctta |
38824508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 30366542 - 30366506
Alignment:
| Q |
234 |
gcaaagttgaagctcctaaatgattaatgtaagctta |
270 |
Q |
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| T |
30366542 |
gcaaagttgaagctctgaaatgattaatgtaagctta |
30366506 |
T |
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