View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5125-Insertion-3 (Length: 594)

Name: NF5125-Insertion-3
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5125-Insertion-3
NF5125-Insertion-3
[»] chr1 (9 HSPs)
chr1 (8-594)||(6523050-6523633)
chr1 (19-161)||(47777796-47777938)
chr1 (20-69)||(47713401-47713450)
chr1 (20-69)||(47745984-47746033)
chr1 (51-120)||(6507147-6507216)
chr1 (23-66)||(6500290-6500333)
chr1 (29-120)||(6517425-6517516)
chr1 (20-71)||(47718195-47718246)
chr1 (24-120)||(6513021-6513117)
[»] scaffold0341 (2 HSPs)
scaffold0341 (51-120)||(1172-1241)
scaffold0341 (51-120)||(8826-8895)


Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Complemental strand, 6523633 - 6523050
Alignment:
Q  8 ttttcaccgtttgagaaattgtagaaaccatagttgatttgcgtgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttgg 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523633 ttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttgg 6523534  T
Q  108 ctgtgtaggtaccggttacgttgttaggattacagaaatagtggaagttttgtgttgtgttatcggctttggctaactgtgatgatgaaaaaattattat 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6523533 ctgtgtaggtaccagttacgttgttaggattacagaaatagtggaagttttgtgttgtgttatcagctttggctaactgtgatgatgaaaaaattattat 6523434  T
Q  208 taggagaaagattgaataatgaaaagaatctagcctcaaggaaataatagccatattggttgttctttgaatcatgagcttctatgtttgcaattatcaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  6523433 taggagaaagattgaataatgaaaagaatctagcctcaaggaaataatagccatattggttgttctttgaatcatgagcttctatg-ttgcaatgatcaa 6523335  T
Q  308 gggcttgtaaaaaatacgtaagacatcatttattttagaatggagggtctttctgttgcaatagatgtcgtattacatttcttgtatagtcaagttgaaa 407  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6523334 gggcttgtaaaaaatacctaagacatcatttattttagaatggagggtctttctgttgcaatagatgtcgtattacattttttgtatagtcaagttgaaa 6523235  T
Q  408 gtcaagatcaattcttttgaatgatatattatttttaatatttagattggatcaaatcaaaacaaactcaaacctaatactatattggtactactagtca 507  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  6523234 gtcaagatcaattcttttgaatgatatattagttttaatatttagattggatcaaatcaaaaccaactcaaacctaatac--tattggtactactagtca 6523137  T
Q  508 aattatgtcacccnnnnnnnattttgattagttaaagtctttcttaatttcaacatattcaattgctccttcttggatgcttgtgag 594  Q
    |||||||||||||       |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6523136 aattatgtcaccctttttttattttgattagtcaaagtctttcttaatttcaacacattcaattgctccttcttggatgcttgtgag 6523050  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 47777938 - 47777796
Alignment:
Q  19 tgagaaattgtagaaaccatagttgatttgcgtgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggta 118  Q
    |||||||||||||||||| || |||||||| ||||||||| |||||||||| | |||||  || |||||||||| |||| | ||||| | ||||||| ||    
T  47777938 tgagaaattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagtta 47777839  T
Q  119 ccggttacgttgttaggattacagaaatagtggaagttttgtg 161  Q
    ||  |  ||||| |  ||| |||||||||||||||||||||||    
T  47777838 cctctctcgttgctgtgatcacagaaatagtggaagttttgtg 47777796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 47713401 - 47713450
Alignment:
Q  20 gagaaattgtagaaaccatagttgatttgcgtgttggaagtgagagtgga 69  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  47713401 gagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattgga 47713450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 47745984 - 47746033
Alignment:
Q  20 gagaaattgtagaaaccatagttgatttgcgtgttggaagtgagagtgga 69  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  47745984 gagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattgga 47746033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 6507147 - 6507216
Alignment:
Q  51 tgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacc 120  Q
    ||||||||||||||||||| ||||| | ||| |||||||| |||||| | ||||||| ||||||| ||||    
T  6507147 tgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttacc 6507216  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 6500290 - 6500333
Alignment:
Q  23 aaattgtagaaaccatagttgatttgcgtgttggaagtgagagt 66  Q
    |||||||||||||| ||||||||||  |||||||||||||||||    
T  6500290 aaattgtagaaaccgtagttgatttctgtgttggaagtgagagt 6500333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 6517425 - 6517516
Alignment:
Q  29 tagaaaccatagttgatttgcgtgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacc 120  Q
    |||||||| ||||||||||   |||||||||||||| |||| | ||| |  ||||||||||| |||||| | ||||||| ||||||| ||||    
T  6517425 tagaaaccgtagttgatttctttgttggaagtgagaatggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagatacc 6517516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 47718195 - 47718246
Alignment:
Q  20 gagaaattgtagaaaccatagttgatttgcgtgttggaagtgagagtggaca 71  Q
    ||||||||||||||||| ||||||||||  ||||||||||| ||| ||||||    
T  47718195 gagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggaca 47718246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 6513021 - 6513117
Alignment:
Q  24 aattgtagaaaccatagttgatttgcgtgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacc 120  Q
    |||| |||||||| |||||||| |   ||||||||||||||||||| ||||| |  ||||||||| | || ||| | ||||||| ||||||| ||||    
T  6513021 aattatagaaaccgtagttgatatctttgttggaagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttacc 6513117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 1172 - 1241
Alignment:
Q  51 tgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacc 120  Q
    ||||||||||||||||||| ||||| | ||| |||||||| |||||| | ||||||| ||||||| ||||    
T  1172 tgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttacc 1241  T

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Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 8826 - 8895
Alignment:
Q  51 tgttggaagtgagagtggacagaagtgatttaaggtttgtttggtagatactgttggctgtgtaggtacc 120  Q
    ||||||||||||||||||| ||||| | ||| |||||||| |||||| | ||||||| ||||||| ||||    
T  8826 tgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttacc 8895  T

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