View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-4 (Length: 561)
Name: NF5125-Insertion-4
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 209 - 536
Target Start/End: Complemental strand, 11729618 - 11729291
Alignment:
| Q |
209 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaag |
308 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
11729618 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaag |
11729519 |
T |
|
| Q |
309 |
taaatatgaggcaacaaaattttaaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatg |
408 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
11729518 |
taaatatgaggcaacaaaattattaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatg |
11729419 |
T |
|
| Q |
409 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagattagagagaacatacataccttctatta |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11729418 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagaatagagagaacatacataccttctatta |
11729319 |
T |
|
| Q |
509 |
gtttctttcctctggaccacataatttg |
536 |
Q |
| |
|
||||||||||| |||||||||||||||| |
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| T |
11729318 |
gtttctttcctttggaccacataatttg |
11729291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 209 - 536
Target Start/End: Complemental strand, 23739930 - 23739603
Alignment:
| Q |
209 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaag |
308 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
23739930 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaag |
23739831 |
T |
|
| Q |
309 |
taaatatgaggcaacaaaattttaaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatg |
408 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
23739830 |
taaatatgaggcaacaaaattattaaaattactttctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatg |
23739731 |
T |
|
| Q |
409 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagattagagagaacatacataccttctatta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23739730 |
ctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcacacaaccatgattgagaaatagaatagagagaacatacataccttctatta |
23739631 |
T |
|
| Q |
509 |
gtttctttcctctggaccacataatttg |
536 |
Q |
| |
|
||||||||||| |||||||||||||||| |
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|
| T |
23739630 |
gtttctttcctttggaccacataatttg |
23739603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 50834668 - 50834464
Alignment:
| Q |
7 |
atatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatgtgcccatggaaagacgggattgatgatcaaa-gcaaag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
50834668 |
atatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatatgcccatggaaagacgggattgatgatcaaaagcaaag |
50834569 |
T |
|
| Q |
106 |
ctcaacattaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctcttgttcttacaaaccgagaaagcaaattcattcccc |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834568 |
ctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctcttgttcttacaaaccgagaaagcaaattcattcccc |
50834469 |
T |
|
| Q |
206 |
aagtg |
210 |
Q |
| |
|
||||| |
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|
| T |
50834468 |
aagtg |
50834464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 50841185 - 50841389
Alignment:
| Q |
7 |
atatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatgtgcccatggaaagacgggattgatgatcaaa-gcaaag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
50841185 |
atatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtacaggagaatatgcccatggaaagacgggattgatgatcaaaagcaaag |
50841284 |
T |
|
| Q |
106 |
ctcaacattaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctcttgttcttacaaaccgagaaagcaaattcattcccc |
205 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841285 |
ctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattacacacctcttgttcttacaaaccgagaaagcaaattcattcccc |
50841384 |
T |
|
| Q |
206 |
aagtg |
210 |
Q |
| |
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||||| |
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|
| T |
50841385 |
aagtg |
50841389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 43043102 - 43043142
Alignment:
| Q |
494 |
acataccttctattagtttctttcctctggaccacataatt |
534 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
43043102 |
acatatcttctattagtttctttcctatggactacataatt |
43043142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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