View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-5 (Length: 558)
Name: NF5125-Insertion-5
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 11177132 - 11177534
Alignment:
| Q |
7 |
attttgtttggttgatgatgatgatgaaaaataaacagtgtggcttcgatgatggaaactgaagctgaaggtgttgttgatattgataatagacctgcga |
106 |
Q |
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| T |
11177132 |
attttgtttggttgatgatgatga---aaaataaacagtgtggcttcgatgatggaaactgaagctgaaggtgttgttgatattgataatagacctgcga |
11177228 |
T |
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| Q |
107 |
tagaaaattttgatatgatggtgcttgatgataatcnnnnnnngaaggtagttaataataatagtggcggcaacaaaggattgaagagaaatttgaatgg |
206 |
Q |
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| T |
11177229 |
tagaaaattttgatatgatggtgcttgatgataatcaaaaaaagaaggtagttaataataatagtggcggcaacaaaggattgaagagaaatttgaatgg |
11177328 |
T |
|
| Q |
207 |
gggcgacattgaggcagtgccacaacgtggtagaggaagaccgaagaagtcgtcgggttcaggttcgagtttgaataacaataataatagtaatgaattc |
306 |
Q |
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| T |
11177329 |
gggcgacattgaggcagtgccgcaacgtggtagaggcagaccgaagaaggcgtcgggttcaggttcgagtttgaataataataataatagtaatgaattc |
11177428 |
T |
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| Q |
307 |
tttggtccattatgggggaaacaacgcaagggttgtaaatatgaagatgaagataacaagggtgctataacattagcaactagtgatgaagataaggtta |
406 |
Q |
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| T |
11177429 |
tttggtccattatgggggaaacaacgcaagggtggtaaatatgaagatgaagataacaagggtgctataacattagctactagtggtgatgataaggtta |
11177528 |
T |
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| Q |
407 |
atgttg |
412 |
Q |
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| T |
11177529 |
atgttg |
11177534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 407 - 558
Target Start/End: Original strand, 11177580 - 11177734
Alignment:
| Q |
407 |
atgttgaaaattatgaggatg---attataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
503 |
Q |
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| T |
11177580 |
atgttgaaaattatgaggatgatgattataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
11177679 |
T |
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| Q |
504 |
atgtttgtaagaagggatgtttaacgtaggattggggttaaatgttgtattgttg |
558 |
Q |
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| T |
11177680 |
atgtttgtaagaagggatgtttaacataggattggggttaaatgttgtattgttg |
11177734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 11157449 - 11157576
Alignment:
| Q |
78 |
tgttgttgatattgataatag---acctgcgatagaaaattttgatatgatggtgcttgatgataatcnnnnnnngaaggtagttaataataatagtggc |
174 |
Q |
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| T |
11157449 |
tgttgttgatattgataacaacaaacctgcgattgaaaattttgaaatgatggtgtttgatgataat---------aaggtggttaataataatggtggc |
11157539 |
T |
|
| Q |
175 |
ggcaacaaaggattgaagagaaatttgaatgggggcg |
211 |
Q |
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| T |
11157540 |
agcaacaaaggtttgaagagaaactggaatgggggcg |
11157576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 11164365 - 11164515
Alignment:
| Q |
43 |
agtgtggcttcgatgatggaaactgaagctgaaggtgttgttgatattgataatagacctgcgatagaaaattttgatatgatggtgcttgatgataatc |
142 |
Q |
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| T |
11164365 |
agtgtggcttcgatgatggaaactgaag---------ttgttgatgttgataacaaacctgggattgaaacttttgatatgatggtgtttgacgataat- |
11164454 |
T |
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| Q |
143 |
nnnnnnngaaggtagttaataataatagtggcggcaacaaaggattgaagagaaatttgaatgggggcg |
211 |
Q |
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| T |
11164455 |
--------aaggtggttaataataatggtggcagcagcaaaggtttgaagagaaactcgaatgggggcg |
11164515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 424 - 517
Target Start/End: Complemental strand, 4703392 - 4703298
Alignment:
| Q |
424 |
gatgattataatgggaagaggagagtgaggaa-ccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaacatgtttgtaagaag |
517 |
Q |
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| T |
4703392 |
gatgatgataatgggaagaggagaatgaggaaacccgtgaaagaaaggtcactaaaatcgttaatgtgaaatgaagctaacatgtttctaagaag |
4703298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 4703723 - 4703618
Alignment:
| Q |
150 |
gaaggtagttaataataatagtggcggcaacaaaggattgaagagaaatttgaatggg---ggcgacattgaggcagtgccacaacgtggtagaggaaga |
246 |
Q |
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||||||||||||||||||| ||||| |||||||||| ||||||||||| | |||||| || ||||||||||| ||| | ||||||||||| ||| |
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| T |
4703723 |
gaaggtagttaataataatggtggctgcaacaaaggtttgaagagaaactcaaatgggggaggagacattgaggc---gccgcggcgtggtagaggcaga |
4703627 |
T |
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| Q |
247 |
ccgaagaag |
255 |
Q |
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| T |
4703626 |
ccgaagaag |
4703618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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