View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-6 (Length: 507)
Name: NF5125-Insertion-6
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 308118 - 308617
Alignment:
| Q |
8 |
ataatatgcacctgagttatacatgtaaacatggggaaatgaaatacttagttgggcaactcatctctgaaatttccagaacaacctttaagagcttata |
107 |
Q |
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| T |
308118 |
ataatatgcacctgagttatacatgtaaacatggggaaatgaaatacttagttgggcaactcatctctgaaatttccagaacaacctttaagagcttata |
308217 |
T |
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| Q |
108 |
aatattttatgaagccaaaagagcttccccagttttgcaatttggtcatcctcattttgaggaacgatcgaacggcgtccttatcaacgtctttatacaa |
207 |
Q |
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| T |
308218 |
aatattttatgaagccaaaagagcttccccagttttgcaatttggtcatcctcattttgaggaacgatggaacggcgtccttatcaacgtctttatacaa |
308317 |
T |
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| Q |
208 |
atcacgttgccacttctcagtttgagttttactaggaagatatccttaccttccaacaaatttatctcttcccatggaattgtcattgccagcattgccc |
307 |
Q |
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| T |
308318 |
atcacgttgccacttctcagtttgagttttactaggaagatatccttaccttccaacaaatttatctcttcccatggaattgtcattgccagcattgccc |
308417 |
T |
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| Q |
308 |
ctatgcctttctcttgacgcaaaacctgactctcccagtttttatccttgtagggtgctttgtcatctgcaaattgcttctcaggtctgtccaaatggta |
407 |
Q |
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| T |
308418 |
ctatgcctttctcttgacgcaaaacctgactctcccagtttttatccttgtagggtgctttgtcatctgcaaattgcttctcaggtctgtccaaatggta |
308517 |
T |
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| Q |
408 |
tggattgctgcttctttcctccttcctttctgtcctttctggacgatggttaaactggccttttgcagctagattaacttcttctgaatccaccggagcc |
507 |
Q |
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| T |
308518 |
tggattgctgcttctttcctccttcctttctgtcctttctggacgatggttaaactggccttttgcagctagattaacgtctcctgaatccaccggagcc |
308617 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 450
Target Start/End: Complemental strand, 48117101 - 48117019
Alignment:
| Q |
368 |
tgtcatctgcaaattgcttctcaggtctgtccaaatggtatggattgctgcttctttcctccttcctttctgtcctttctgga |
450 |
Q |
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| T |
48117101 |
tgtcctctgcaattcgcttctcaggtctatctagatggttagggttgctgcttctttcctccttcctttcattcctttctgga |
48117019 |
T |
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