View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-8 (Length: 460)
Name: NF5125-Insertion-8
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Original strand, 35766532 - 35766985
Alignment:
| Q |
7 |
aatttccccaaagttagggcatttttgggattatttatgtctgtatgtatatccattttaagtttgggtttggttttgattgataaattgtcggagactt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35766532 |
aatttccccaaagttagggcatttttgggattatttatgtctgtatgtatatccattttaagtttgggtttggttttgattgataaattgtcggagactt |
35766631 |
T |
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| Q |
107 |
ataaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcc |
206 |
Q |
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| T |
35766632 |
ataaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcc |
35766731 |
T |
|
| Q |
207 |
tgtggctcttgttccttttaatacaaaccatggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcgcaataaacttttttat |
306 |
Q |
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| T |
35766732 |
tgtggctcttgttccttttaatacaaaccatggtgtgaatgatggtgtgtatctgaatggttgtctaaattggttggcccttcgcaataaacttttttat |
35766831 |
T |
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| Q |
307 |
gttggtgtttctggttaggagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgg |
406 |
Q |
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| T |
35766832 |
gttggtgtttctggttaggagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgg |
35766931 |
T |
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| Q |
407 |
gggttttgatgaaacgtcagctattgaaccattgttaagtatattgatggactg |
460 |
Q |
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| T |
35766932 |
gggttttgatgaaacgtcagctattgaaccattgttaagtatattgatggactg |
35766985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 19358741 - 19358848
Alignment:
| Q |
101 |
agacttataaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaag |
200 |
Q |
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||||||||||||| ||| |||| |||| ||||||||||| | |||||| || || |||||||| |||| || |||||||||||| || ||||||| |
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| T |
19358741 |
agacttataaggttgtgatgttacttttggatgaagctgaaaacagaactcgtgcgcgagttttaaatttgcgtgataatgtttggaaacctattcaaat |
19358840 |
T |
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| Q |
201 |
ttttcctg |
208 |
Q |
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|||||||| |
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| T |
19358841 |
ttttcctg |
19358848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 457
Target Start/End: Original strand, 36260088 - 36260217
Alignment:
| Q |
326 |
agaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtca |
425 |
Q |
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|||||||| || ||| | |||||||||||||||| ||||| |||| |||| ||||| |||||| |||||||||||||| | ||||||||||||| |||| |
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| T |
36260088 |
agaaaatgaatgttaaaaaatttgtgattgtttcacttgatctggaaaca--gagacatacacaaagttgatgcctccttgcggttttgatgaaatgtca |
36260185 |
T |
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| Q |
426 |
gctattgaaccattgttaagtatattgatgga |
457 |
Q |
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| T |
36260186 |
cctattgagccatcggtatgtatattgttgga |
36260217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 290
Target Start/End: Original strand, 36254976 - 36255168
Alignment:
| Q |
100 |
gagacttataaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaa |
199 |
Q |
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| T |
36254976 |
gagacttataaggttgtgatgttaattttggatgatgttaaaaatagaactgacgtgcaaactttatgtgtgtgtaataatgtttggaaacctattcaaa |
36255075 |
T |
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| Q |
200 |
gttttcctgtggctcttgttccttt--taatacaaaccatggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcg |
290 |
Q |
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| T |
36255076 |
attttcctgctgttcttcttccttttgtgatactagtcctggtgtgaatgatggtgtgtatttgaatggtagttttaattggttggcacttcg |
36255168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 46769018 - 46769088
Alignment:
| Q |
138 |
tgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcctg |
208 |
Q |
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| T |
46769018 |
tgaaaatagaactcatgtgcaagttttgagtgtgggtgataatatttggagaactattcaaagttttcctg |
46769088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 420
Target Start/End: Original strand, 36255221 - 36255293
Alignment:
| Q |
346 |
tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaa |
420 |
Q |
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| T |
36255221 |
tttgtgattgttgcgcttgatctgggaac--agagacatacacgcagctgatgcctccgcgtggttttgatgaaa |
36255293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 18953299 - 18953261
Alignment:
| Q |
176 |
ataatgtttggagacgcattcaaagttttcctgtggctc |
214 |
Q |
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| T |
18953299 |
ataatgtttggagacatattcaaagttttcctgtggctc |
18953261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 18983346 - 18983308
Alignment:
| Q |
176 |
ataatgtttggagacgcattcaaagttttcctgtggctc |
214 |
Q |
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| T |
18983346 |
ataatgtttggagacatattcaaagttttcctgtggctc |
18983308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 18997992 - 18997954
Alignment:
| Q |
176 |
ataatgtttggagacgcattcaaagttttcctgtggctc |
214 |
Q |
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| T |
18997992 |
ataatgtttggagacatattcaaagttttcctgtggctc |
18997954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 20495533 - 20495586
Alignment:
| Q |
237 |
tggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcg |
290 |
Q |
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| T |
20495533 |
tggtgtgaatgatggtgtgtatttgaatggtagtctgaattggttggctcttcg |
20495586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 30398771 - 30398820
Alignment:
| Q |
138 |
tgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttgga |
187 |
Q |
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|||| |||||||| |||||| |||||||||| ||| |||||||||||||| |
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| T |
30398771 |
tgaaaatagaactcatgtgcgagttttaagtgtggctaataatgtttgga |
30398820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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