View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125-Insertion-9 (Length: 446)
Name: NF5125-Insertion-9
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 43376453 - 43376027
Alignment:
| Q |
8 |
attatggaattgaaagacacaaacnnnnnnntaataatgattttgttacaaacatgaataagagagagggagatggagggtcttacttgtgatgataaga |
107 |
Q |
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| T |
43376453 |
attatggaattgaaagacacaaacaaaaaataaataatgattttgttacaaacatgaataagagagagggagatggagggtcttacttgtgatgataaga |
43376354 |
T |
|
| Q |
108 |
atgtgaaattgtaacagcaatggttgaaattattaaaaaagaatgattacgtagaatgcagtgattgattagtgggaattaaggtagatcgggaactcct |
207 |
Q |
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| T |
43376353 |
atgtaaaattgtaacagcaatggttgaaattattaaaaaagaatgattacgtagaatgcagggattgattagtgggaattaaggtagatcgggaactcct |
43376254 |
T |
|
| Q |
208 |
aactctgtgggaaacaaaacaagaaatagactcaaatgtgtttttgagaattctctacgttaatgtaatgcaaaatcgaaacgaataaaatttg------ |
301 |
Q |
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| T |
43376253 |
aactctgtgggaaacaaaacaagaaatagactcaaatgtgtttttgagaattctctacgttaatgtaatgcaaaatcgaaacgaataaaatttgtttttt |
43376154 |
T |
|
| Q |
302 |
-nnnnnnnnnncctagttgtcaaaaacacgggaatgacactgtttaccttttctttaacttaacgccacgtgttctaaggtaaccacgttgataattgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43376153 |
ttttttttttttctagttgtcaaaaacacgggaatgacactgtttaccttttctttaacttaacgccacgtgttctaaggtaaccacgttgacaattgac |
43376054 |
T |
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| Q |
401 |
cttcgaactcaccctaccagatcagat |
427 |
Q |
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| T |
43376053 |
cttcgaactcaccctaccagatcagat |
43376027 |
T |
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