View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125_high_1 (Length: 410)
Name: NF5125_high_1
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 65 - 394
Target Start/End: Complemental strand, 1080111 - 1079788
Alignment:
| Q |
65 |
gttttcacattgaggttttgggattccttcgtcatcaatgttttcacaattgggttttgggattccttcatcctcaatgttttcgcagttgggtttcggc |
164 |
Q |
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| T |
1080111 |
gttttcacaattgggtttcgggattccttcatcctcaatgttttcgcagttgggtttcggcattccttcatcatcattcttttcacaattgggtttcggg |
1080012 |
T |
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| Q |
165 |
attccttcatcgtcattattttcacaattgggtttcgagattccttcgtcatcgcattgaccatccttgcaatccttagatggagctgtatcaacttcaa |
264 |
Q |
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| T |
1080011 |
attccttcatcgtcattattttcacaattgggtttcgagatcccttcgtcatcgcattgaccatccttgcaatccttagatggagctgtatcatcttcaa |
1079912 |
T |
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| Q |
265 |
cacaatgaggtaacctgttgtcatccaaaactccgttttcacttccattaagaggctttggagaattgcttttcacctgtaggttattgcttttgttaac |
364 |
Q |
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| T |
1079911 |
cacaatgaagtaacctgttgtcatccaaaactccattttcacttccattaagaggctttggagaattgcttttcacctgtaggttattgctttt------ |
1079818 |
T |
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| Q |
365 |
cagtcctgatccactataacccctcttttt |
394 |
Q |
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| T |
1079817 |
aagtcctgatccactataacccctcttttt |
1079788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 1080205 - 1080004
Alignment:
| Q |
10 |
catcatcactatcaaacacaatatcagtatcactatcaacaatttcatcatcggcgttttcacattgaggttttgggattccttcgtcatcaatgttttc |
109 |
Q |
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| T |
1080205 |
catcatcactatcaaacacaatatcagtatcactatcaacaatttcatcatcggcgttttcacattgaggttttgggattccttcgtcatcaatgttttc |
1080106 |
T |
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| Q |
110 |
acaattgggttttgggattccttcatcctcaatgttttcgcagttgggtttcggcattccttcatcgtcattattttcacaattgggtttcgagattcct |
209 |
Q |
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| T |
1080105 |
acaattgggtttcgggattccttcatcctcaatgttttcgcagttgggtttcggcattccttcatcatcattcttttcacaattgggtttcgggattcct |
1080006 |
T |
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| Q |
210 |
tc |
211 |
Q |
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|| |
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| T |
1080005 |
tc |
1080004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 1080150 - 1080037
Alignment:
| Q |
104 |
gttttcacaattgggttttgggattccttcatcctcaatgttttcgcagttgggtttcggcattccttcatcgtcattattttcacaattgggtttcgag |
203 |
Q |
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| T |
1080150 |
gttttcacattgaggttttgggattccttcgtcatcaatgttttcacaattgggtttcgggattccttcatcctcaatgttttcgcagttgggtttcggc |
1080051 |
T |
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| Q |
204 |
attccttcgtcatc |
217 |
Q |
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| T |
1080050 |
attccttcatcatc |
1080037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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