View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125_high_11 (Length: 248)
Name: NF5125_high_11
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 8952238 - 8952011
Alignment:
| Q |
21 |
aacgtgtctgtcttgcgtgtcatctgatatgaggatattcccctgagtagtaggagacgcagtcacgcagacacatttacaatagtctcaacactattcg |
120 |
Q |
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| T |
8952238 |
aacgtgtctgtcttgcgtgccatctgatatgaggatcttcccctgactagtaggagacgcagtcacgcagacacatttacaatagtctcaacactatttg |
8952139 |
T |
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| Q |
121 |
caaaaaatgcgtatcatttacattttgtatgtcataaccagaacgagattcaaacgaaaagatgactattcaaaagatgtactgtacatcacacaaggca |
220 |
Q |
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| T |
8952138 |
caaaaaatgcgtatcatttacatttcgtatgtcataaccagaacaagattcaaacgaaaagatgactattcaaaagatgtactgtacatcacacaaggca |
8952039 |
T |
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| Q |
221 |
ggactaggactaggaggatcattgtagt |
248 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
8952038 |
ggactagaactaggaggatcattgtagt |
8952011 |
T |
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