View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5125_high_5 (Length: 309)

Name: NF5125_high_5
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5125_high_5
NF5125_high_5
[»] chr1 (7 HSPs)
chr1 (35-291)||(45065624-45065882)
chr1 (58-130)||(43893372-43893443)
chr1 (38-131)||(45008048-45008141)
chr1 (60-118)||(41198016-41198074)
chr1 (42-127)||(611524-611609)
chr1 (43-122)||(47990222-47990302)
chr1 (103-131)||(50824899-50824927)
[»] chr5 (12 HSPs)
chr5 (38-125)||(15884641-15884728)
chr5 (35-139)||(8920169-8920273)
chr5 (44-123)||(35473426-35473505)
chr5 (35-128)||(21922032-21922125)
chr5 (35-125)||(41173343-41173433)
chr5 (35-128)||(14532595-14532688)
chr5 (43-132)||(29463094-29463183)
chr5 (71-132)||(38363486-38363547)
chr5 (43-120)||(42509705-42509782)
chr5 (62-122)||(37172642-37172702)
chr5 (74-130)||(5007620-5007676)
chr5 (103-135)||(41175587-41175619)
[»] chr2 (11 HSPs)
chr2 (35-132)||(6646914-6647011)
chr2 (35-135)||(2971695-2971795)
chr2 (35-128)||(6511444-6511537)
chr2 (35-128)||(32972792-32972885)
chr2 (35-129)||(33045634-33045728)
chr2 (35-129)||(40443140-40443234)
chr2 (43-128)||(30977987-30978071)
chr2 (43-129)||(40504325-40504411)
chr2 (38-124)||(10094626-10094712)
chr2 (35-120)||(44996636-44996721)
chr2 (43-94)||(14876815-14876867)
[»] chr8 (10 HSPs)
chr8 (35-130)||(3946331-3946426)
chr8 (35-129)||(32954931-32955025)
chr8 (43-124)||(44064456-44064537)
chr8 (35-123)||(37657080-37657168)
chr8 (42-129)||(39211139-39211226)
chr8 (63-122)||(15794932-15794991)
chr8 (35-122)||(17775317-17775404)
chr8 (60-122)||(40528864-40528926)
chr8 (43-122)||(999153-999232)
chr8 (66-122)||(34476278-34476334)
[»] chr7 (18 HSPs)
chr7 (35-128)||(37899100-37899193)
chr7 (35-130)||(37899414-37899509)
chr7 (35-130)||(37905925-37906020)
chr7 (42-129)||(31711823-31711910)
chr7 (35-129)||(10578158-10578252)
chr7 (36-122)||(22638777-22638863)
chr7 (35-129)||(35192160-35192254)
chr7 (38-122)||(3709063-3709147)
chr7 (37-124)||(33224916-33225003)
chr7 (36-122)||(49103482-49103568)
chr7 (37-130)||(35293209-35293302)
chr7 (43-122)||(31487290-31487369)
chr7 (42-122)||(24680862-24680942)
chr7 (35-125)||(35586667-35586753)
chr7 (72-122)||(32952344-32952394)
chr7 (62-122)||(1258570-1258631)
chr7 (103-132)||(41458754-41458783)
chr7 (103-131)||(7817794-7817822)
[»] chr4 (12 HSPs)
chr4 (35-129)||(2401701-2401795)
chr4 (37-129)||(51225411-51225503)
chr4 (43-129)||(42062518-42062604)
chr4 (54-125)||(35500690-35500761)
chr4 (43-94)||(8810670-8810722)
chr4 (81-130)||(33093002-33093050)
chr4 (35-128)||(37060406-37060499)
chr4 (106-135)||(41486024-41486053)
chr4 (103-131)||(2999270-2999298)
chr4 (100-128)||(10779982-10780010)
chr4 (100-128)||(10973591-10973619)
chr4 (35-131)||(17776524-17776620)
[»] chr6 (4 HSPs)
chr6 (43-130)||(28748211-28748298)
chr6 (38-122)||(34851580-34851664)
chr6 (60-122)||(10053052-10053114)
chr6 (63-128)||(3832582-3832646)
[»] scaffold0034 (1 HSPs)
scaffold0034 (43-128)||(22677-22762)
[»] chr3 (14 HSPs)
chr3 (35-130)||(30567845-30567940)
chr3 (35-129)||(42962386-42962480)
chr3 (43-130)||(33374592-33374679)
chr3 (35-128)||(10811226-10811319)
chr3 (43-128)||(54260091-54260176)
chr3 (71-129)||(31445997-31446055)
chr3 (42-122)||(32631452-32631531)
chr3 (35-123)||(48346917-48347005)
chr3 (42-129)||(9753316-9753403)
chr3 (49-132)||(13778537-13778620)
chr3 (60-131)||(37780427-37780498)
chr3 (43-85)||(1340112-1340154)
chr3 (63-128)||(36412242-36412307)
chr3 (81-132)||(32187279-32187331)
[»] scaffold0100 (1 HSPs)
scaffold0100 (53-85)||(44883-44915)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 45065882 - 45065624
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatt 134  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||| |||||||||||||||| |||||||||    
T  45065882 tgctttggtttttgtgtcaagattcacatttctttctatattttgattgtcccacaagttgtcttacaaaatgattgttcaaataacactactctaaatt 45065783  T
Q  135 atatggagaga--aacaaaacaaaaacatttctgttcagccttacctcgtgctgatgggggtggtgggttgaagtttcacgttcgtaggagaaatgcata 232  Q
    |||||||||||  |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  45065782 atatggagagagaaacaaaacaaaaacatttttgttcagctttacctcatgctgatgggggtggtgggttgaagcttcacgttcgtagaagaaatgcata 45065683  T
Q  233 ggaaagaacgaacgtgttcctattcttgagaagaaactgaaacttaccgtgacggatga 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45065682 ggaaagaacgaacgtgttcctattcttgagaagaaactgaaacttaccgtgacggatga 45065624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 43893372 - 43893443
Alignment:
Q  58 tcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||||||||| ||||||||||||||| || ||||| ||   ||||||||||||||||||||||||||||||    
T  43893372 tcacatttctttgtatattttggttgtcccacaagttgtccg-taaaatggttgttcaaataacactcctcta 43893443  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 45008141 - 45008048
Alignment:
Q  38 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 131  Q
    |||||||||||| ||||   | |||||||||| ||||||||| |||||  | || || ||||| ||||| ||||||||||||||| ||||||||    
T  45008141 tttagtttttgtatcaatccttacatttctttgtatattttgattgtccaacaaattatcttaaaaaattgttgttcaaataacattcctctaa 45008048  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 41198016 - 41198074
Alignment:
Q  60 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaat 118  Q
    |||||||||| ||| ||||||||||| || ||||| || ||||| ||||||||||||||    
T  41198016 acatttctttgtattttttggttgtcccacaagttgtcctataagatggttgttcaaat 41198074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 611609 - 611524
Alignment:
Q  42 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcct 127  Q
    ||||||||||||| | ||| |||||||| ||||||||| ||||| || ||||| ||    |||||||||| |||||||||| ||||    
T  611609 gtttttgtgtcaatactcatatttctttgtatattttgattgtcccacaagttgtcaacaaaaatggttgctcaaataacattcct 611524  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 47990302 - 47990222
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctctta-taaaatggttgttcaaataaca 122  Q
    |||||||||||| | ||| |||||||| ||||||||||||||| || ||||| ||  |  ||||| |||||||||||||||    
T  47990302 tttttgtgtcaatactcatatttctttgtatattttggttgtcccacaagttgtcaaacaaaaatagttgttcaaataaca 47990222  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 50824899 - 50824927
Alignment:
Q  103 aaatggttgttcaaataacactcctctaa 131  Q
    |||||||||||||||||||||||||||||    
T  50824899 aaatggttgttcaaataacactcctctaa 50824927  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 15884728 - 15884641
Alignment:
Q  38 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 125  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||    
T  15884728 tttagtttttgtgtcaagactcacatttctttctatattttggttgtcccacaagttatcttacaaaatggttgttcaaataacactc 15884641  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 8920169 - 8920273
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatt 134  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||| | ||    
T  8920169 tgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcttattt 8920268  T
Q  135 atatg 139  Q
    |||||    
T  8920269 atatg 8920273  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 35473426 - 35473505
Alignment:
Q  44 ttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 123  Q
    ||||||| ||||| |||||||||||| ||||||||  |||| ||| ||||| || |||||||||||||||||||||||||    
T  35473426 ttttgtgccaagactcacatttctttgtatattttaattgtttcacaagttgtcctataaaatggttgttcaaataacac 35473505  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 21922125 - 21922032
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| ||||||||| ||||| || |||| |||||| |||||| |||||| || || || || || |||||||||||||||||||||||||||    
T  21922125 tgctttggtttttgtgccaagactcgcattcctttctctatttttgttgtcccacaaattgtcctagaaaatggttgttcaaataacactcctc 21922032  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 41173343 - 41173433
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 125  Q
    |||||| |||||||||  |||| |||||||||||| ||||||||| ||||| || || || || || |||||| |||||||||||||||||    
T  41173343 tgctttggtttttgtgctaagactcacatttctttttatattttgattgtcccacaaattatcctacaaaatgattgttcaaataacactc 41173433  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 14532595 - 14532688
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| ||| ||||||||| ||||| |||||||| ||||||| |||| ||||| || || ||    |||||||||||||||||||||||||||    
T  14532595 tgctttggttcttgtgtcaatattcatatttctttgtatatttaggttatctcacaaattgtcaacgaaaatggttgttcaaataacactcctc 14532688  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 29463094 - 29463183
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 132  Q
    |||||||| ||| | ||| |||||||| ||||||| ||||||| || ||||| ||    |||||||||||||||||||||||||||||||    
T  29463094 tttttgtgccaatactcatatttctttgtatatttaggttgtcccacaagttgtcaacaaaaatggttgttcaaataacactcctctaaa 29463183  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 38363486 - 38363547
Alignment:
Q  71 tatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 132  Q
    ||||||||||||||| || ||||| ||  ||||||||||||||||||||| | |||||||||    
T  38363486 tatattttggttgtcccacaagttgtcacataaaatggttgttcaaataatattcctctaaa 38363547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 42509705 - 42509782
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataa 120  Q
    ||||| |||||| ||| ||||||||||  ||||||||||||||| ||||||||||| |  || || ||||||||||||    
T  42509705 tttttatgtcaatatttacatttctttgcatattttggttgtctaataagttctctcaacaagtgattgttcaaataa 42509782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 37172702 - 37172642
Alignment:
Q  62 atttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||||||| ||||||||| ||||| ||||| || ||||| || ||||||||||||||||||    
T  37172702 atttctttgtatattttgattgtcccataaattatcttaaaatatggttgttcaaataaca 37172642  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 5007676 - 5007620
Alignment:
Q  74 attttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||||||||| || ||||| ||| | |||||||||||| ||||||||||| ||||    
T  5007676 attttggttgtcccacaagttgtctaaaaaaatggttgtttaaataacactcttcta 5007620  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 41175619 - 41175587
Alignment:
Q  103 aaatggttgttcaaataacactcctctaaatta 135  Q
    ||||||||||||||||||||||||||| |||||    
T  41175619 aaatggttgttcaaataacactcctcttaatta 41175587  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 6646914 - 6647011
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 132  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||||    
T  6646914 tgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctctaaa 6647011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 2971795 - 2971695
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaatt 134  Q
    |||||| ||||||||  ||||| |||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||    
T  2971795 tgctttggtttttgtaccaagactcacatttttttctatattttggttgtcccacaagttgtcttacaaaatggttgttcaaataacactcctctaaatt 2971696  T
Q  135 a 135  Q
    |    
T  2971695 a 2971695  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 6511537 - 6511444
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||| || || ||||||||||||||||||||| |||||    
T  6511537 tgctttggtttttgtgtcaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacattcctc 6511444  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 32972885 - 32972792
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||    
T  32972885 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctc 32972792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 33045634 - 33045728
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||| |||| |||  ||||| |||||||||||||||||||||||||||| || || || || || |||||||||||| |||||||||||||||    
T  33045634 tgctttggtttctgtaccaagactcacatttctttctatattttggttgtcccacaaattgtcatacaaaatggttgtttaaataacactcctct 33045728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 40443140 - 40443234
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||| ||||||||||| | | | |||||||||| ||||||||||||||| || ||||| ||    ||||||||||||||||||||||||||||    
T  40443140 tgctttggtttttgtgtcgatactaacatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacactcctct 40443234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 30977987 - 30978071
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||||| | ||| |||||||||||| ||||||||| ||||| || ||||| ||  |||||||||||||||||||||||||||||    
T  30977987 tttttgtgcctagactcacatttcttt-tatattttgattgtcccacaagttgtcccataaaatggttgttcaaataacactcctc 30978071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 40504325 - 40504411
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||||||||| | | |||||||||| ||||||||||||||| || ||||| ||    ||||||||||||||||||||||| ||||    
T  40504325 tttttgtgtcaatactaacatttctttatatattttggttgtcccacaagttatcaacaaaaatggttgttcaaataacacttctct 40504411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 10094712 - 10094626
Alignment:
Q  38 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 124  Q
    |||||||||||| |||| ||  | |||||||| ||||||||| |||| ||||||||| |   | ||||||||| |||||||||||||    
T  10094712 tttagtttttgtatcaatatctatatttctttatatattttgtttgtttcataagtttttccaaaaaatggttattcaaataacact 10094626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 44996636 - 44996721
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatatt-ttggttgtctcataagttctcttataaaatggttgttcaaataa 120  Q
    |||||| |||||||||||||||   ||||||||||||||||| ||| ||||| ||||| || |  || |||||||||||||||||||    
T  44996636 tgctttggtttttgtgtcaagacatacatttctttctatattcttgattgtcccataaattat-ataaaaaatggttgttcaaataa 44996721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 14876815 - 14876867
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctata-ttttggttgtctcataagtt 94  Q
    ||||||||||||||  |||||||||||||||| |||| |||||| ||||||||    
T  14876815 tttttgtgtcaagacacacatttctttctatatttttagttgtcccataagtt 14876867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 3946331 - 3946426
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||| ||||||||| ||||| |||||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  3946331 tgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 3946426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 32954931 - 32955025
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||   | ||||| || |||||||||||||||||||||||||||||||    
T  32954931 tgctttggtttttgtgtcaagactcacatttctttctatattttggttgtactacaagttgtcctataaaatggttgttcaaataacactcctct 32955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 44064456 - 44064537
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 124  Q
    |||||||||||||| | |||||| |||||||||||| | ||||||| | ||| ||||| |||||||||||||||||||||||    
T  44064456 tttttgtgtcaagacttacatttttttctatattttagctgtctcacatgttatcttacaaaatggttgttcaaataacact 44064537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 37657080 - 37657168
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 123  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| |  ||||| || || ||||| ||||||||||||||||    
T  37657080 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtccctgaagttgtcatacaaaatagttgttcaaataacac 37657168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 39211139 - 39211226
Alignment:
Q  42 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    ||||||||||||| | ||| |||||||| ||||||| | |||||||| ||||| ||    |||||| |||||||||||||||||||||    
T  39211139 gtttttgtgtcaatactcatatttctttgtatatttagattgtctcacaagttgtcaacaaaaatgattgttcaaataacactcctct 39211226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 15794991 - 15794932
Alignment:
Q  63 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||||| |||||||| ||||||  | ||||| ||| |||||||||||||||||||||||    
T  15794991 tttctttgtatattttagttgtcctacaagttgtctcataaaatggttgttcaaataaca 15794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 17775404 - 17775317
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||||| ||||||||||||||||  | |||||||| |||||||| ||||||  | ||||| |   ||||||| |||||||||||||||    
T  17775404 tgctttggtttttgtgtcaagatctatatttctttgtatattttagttgtcctacaagttgttacataaaatagttgttcaaataaca 17775317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 40528864 - 40528926
Alignment:
Q  60 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||||| || ||||||||||||||| |  || || |||||| ||||||||||||||||||||    
T  40528864 acatttccttgtatattttggttgtcccccaaattatcttatgaaatggttgttcaaataaca 40528926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 999232 - 999153
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatatt-ttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||| |||||||||   ||||||||||||||||| |||||||||| ||||||| |  || ||| |||||||||||||||||    
T  999232 ttttcgtgtcaagacatacatttctttctatattcttggttgtctaataagttgt-ataaaaagtggttgttcaaataaca 999153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 34476278 - 34476334
Alignment:
Q  66 ctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||| ||||||||| |||||| ||||||| ||  | |||||||||||||||||||||    
T  34476278 ctttgtatattttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 34476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 37899193 - 37899100
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||    
T  37899193 tgctttggtttttgtgccaagattcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctc 37899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 37899414 - 37899509
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  37899414 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 37899509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 37905925 - 37906020
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||    
T  37905925 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctcta 37906020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 31711910 - 31711823
Alignment:
Q  42 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| || || || || || ||||||||||||||||||||||||||||    
T  31711910 gtttttgtgccaagactcacatttctttctatattttggttgtcccacaaattatcctacaaaatggttgttcaaataacactcctct 31711823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 10578158 - 10578252
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||||| || || || || || ||||| ||||||||||||||||||||||    
T  10578158 tgctttagtttttataccaagattcacatttctttctatattttggttgtcccacaaattatcctacaaaatagttgttcaaataacactcctct 10578252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 22638863 - 22638777
Alignment:
Q  36 gctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||| ||||||||| ||||| | |||||||||||||||||||| ||||| || ||||| || || |||||||||||||||||||||    
T  22638863 gctttggtttttgtgccaagactaacatttctttctatattttgattgtcccacaagttgtcctacaaaatggttgttcaaataaca 22638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 35192254 - 35192160
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||| ||||||||| | ||| |||||||||||| |||||||| |||||  |||||||| || ||||||||  |||||||||||||||||||||    
T  35192254 tgctttggtttttgtgcctagactcacatttctttatatattttagttgttccataagttgtcctataaaataattgttcaaataacactcctct 35192160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 3709147 - 3709063
Alignment:
Q  38 tttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||||| || |||||||||||  || ||||||||    
T  3709147 tttagtttttgtgtcaagatctacatttatttatatattttagttgtctcataagttttcatataaaatggtcatttaaataaca 3709063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 33224916 - 33225003
Alignment:
Q  37 ctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacact 124  Q
    |||| ||||||||| ||||| |||||||||||||||||||||  ||||| || ||||| || || |||||| ||||||||||||||||    
T  33224916 ctttggtttttgtgccaagactcacatttctttctatattttaattgtcccacaagttatcctacaaaatgattgttcaaataacact 33225003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 49103568 - 49103482
Alignment:
Q  36 gctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||| |||||||||||||||   |||||||||| ||||||||||||||| || ||||| ||| || |||||||| |||||||||||    
T  49103568 gctttggtttttgtgtcaagacatacatttctttgtatattttggttgtcccacaagttgtctcatgaaatggttattcaaataaca 49103482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 35293209 - 35293302
Alignment:
Q  37 ctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||| ||||||||| | ||| ||| |||||||| ||||||||| ||||| || ||||| ||  |||||||||||||| ||||||||||||||||    
T  35293209 ctttggtttttgtgcctagactcatatttctttgtatattttgattgtcccacaagttatcccataaaatggttgtttaaataacactcctcta 35293302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 31487290 - 31487369
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||||||||||||   |||||||||| || |||||||||||  |||||||| ||  ||||| |||||||||||||||||    
T  31487290 tttttgtgtcaagacctacatttctttgtaaattttggttgttccataagttgtcacataaagtggttgttcaaataaca 31487369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 24680942 - 24680862
Alignment:
Q  42 gtttttgtgtcaagattcacatttctttctata-ttttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||| |||||||||   ||||||||||||||| |||| ||||||||||||||| || || ||| |||||||||||||||||    
T  24680942 gttttcgtgtcaagacatacatttctttctatattttttgttgtctcataagttatc-taaaaagtggttgttcaaataaca 24680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 35586753 - 35586667
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 125  Q
    |||||| ||||||||| ||||| ||||||||||    |||||||| ||||| || ||||| || || |||||| |||||||||||||||||    
T  35586753 tgctttggtttttgtgccaagactcacatttct----atattttgattgtcccacaagttatcctacaaaatgattgttcaaataacactc 35586667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 32952394 - 32952344
Alignment:
Q  72 atattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||||||||||||||||||| || || || ||||| |||||||||||||||    
T  32952394 atattttggttgtctcataaattatcctaaaaaatagttgttcaaataaca 32952344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 1258570 - 1258631
Alignment:
Q  62 atttctttctatattttggttgtctcataagttctct-tataaaatggttgttcaaataaca 122  Q
    |||||||| |||||||||||||||||| ||||| |||  | |||||| ||||||||||||||    
T  1258570 atttctttatatattttggttgtctcacaagttttctaaaaaaaatgattgttcaaataaca 1258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 41458754 - 41458783
Alignment:
Q  103 aaatggttgttcaaataacactcctctaaa 132  Q
    ||||||||||||||||||||||||||||||    
T  41458754 aaatggttgttcaaataacactcctctaaa 41458783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 7817794 - 7817822
Alignment:
Q  103 aaatggttgttcaaataacactcctctaa 131  Q
    |||||||||||||||||||||||||||||    
T  7817794 aaatggttgttcaaataacactcctctaa 7817822  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 2401701 - 2401795
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||| ||||||||| ||||| ||||||||||| |||||||||||||||| || ||||| || || ||||||||||||||||||||||||||||    
T  2401701 tgctttggtttttgtgccaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcctct 2401795  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 51225503 - 51225411
Alignment:
Q  37 ctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||| ||||||||| ||||| |||||||||||| ||||||||||||||| || ||||| | ||||||||| ||||||||||||||||| ||||    
T  51225503 ctttggtttttgtgccaagactcacatttctttttatattttggttgtcccacaagttgttttataaaatagttgttcaaataacacttctct 51225411  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 42062604 - 42062518
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||||| | ||| |||||||||||| ||||||||||||||| || ||||| ||  ||||||||||||||||||||||||||||||    
T  42062604 tttttgtgcctagactcacatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacactcctct 42062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 35500761 - 35500690
Alignment:
Q  54 agattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactc 125  Q
    |||||||||||||||||||| |||| ||||||  | |||||  | |||||||||||||||||||||||||||    
T  35500761 agattcacatttctttctatgttttagttgtcctacaagttgccatataaaatggttgttcaaataacactc 35500690  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 8810670 - 8810722
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatatt-ttggttgtctcataagtt 94  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  8810670 ttttcgtgtcaagatatacatttctttctatattcttggttgtctcataagtt 8810722  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 33093050 - 33093002
Alignment:
Q  81 ttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||||||||||| || |||||| |||||||||||||||||| ||||||    
T  33093050 ttgtctcataagttatcgtataaa-tggttgttcaaataacacacctcta 33093002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 37060406 - 37060499
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| ||| || |||||| |||||  ||||||| || |||| |||||||||| ||||| ||    ||||||||| |||||||||||||||||    
T  37060406 tgctttggttcttatgtcaatattcatttttctttgtaaatttaggttgtctcaaaagttgtcaacaaaaatggttattcaaataacactcctc 37060499  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 41486053 - 41486024
Alignment:
Q  106 tggttgttcaaataacactcctctaaatta 135  Q
    ||||||||||||||||||||||||||||||    
T  41486053 tggttgttcaaataacactcctctaaatta 41486024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 2999270 - 2999298
Alignment:
Q  103 aaatggttgttcaaataacactcctctaa 131  Q
    |||||||||||||||||||||||||||||    
T  2999270 aaatggttgttcaaataacactcctctaa 2999298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 10780010 - 10779982
Alignment:
Q  100 ataaaatggttgttcaaataacactcctc 128  Q
    |||||||||||||||||||||||||||||    
T  10780010 ataaaatggttgttcaaataacactcctc 10779982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 10973619 - 10973591
Alignment:
Q  100 ataaaatggttgttcaaataacactcctc 128  Q
    |||||||||||||||||||||||||||||    
T  10973619 ataaaatggttgttcaaataacactcctc 10973591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 17776620 - 17776524
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 131  Q
    ||||||||||||| || ||||||  |||||| ||| || |||||  ||||| || ||||| ||  ||||||| ||||||||||||||| | ||||||    
T  17776620 tgctttagtttttctgccaagatctacatttttttgtaaattttaattgtcccacaagttgtcacataaaattgttgttcaaataacatttctctaa 17776524  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 28748211 - 28748298
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    ||||||||  |||| ||||||||||| |||||||||||||||| || ||||| || || |||||||||||||||||||||||| ||||    
T  28748211 tttttgtgctaagactcacatttcttactatattttggttgtcccacaagttgtcctacaaaatggttgttcaaataacactcttcta 28748298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 34851580 - 34851664
Alignment:
Q  38 tttagtttttgtgtcaagattcacatttctttctatat-tttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||||||||||||| || ||  |||||||||| || || ||||||||||||||||||| | ||| ||||||||| |||||||||||    
T  34851580 tttagtttttgtgttaatatatacatttctttgtaaatctttggttgtctcataagttgtttta-aaaatggttcttcaaataaca 34851664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 10053114 - 10053052
Alignment:
Q  60 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    |||||||||| |||||||| |||||| || ||||| ||  ||||||| |||||||||||||||    
T  10053114 acatttctttgtatattttagttgtcccacaagttatccaataaaatagttgttcaaataaca 10053052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 3832582 - 3832646
Alignment:
Q  63 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    ||||||| || ||| |||||||| |||||||| ||  || ||||||||||||||||||||||||||    
T  3832582 tttctttgtaaattatggttgtcccataagttgtca-atcaaatggttgttcaaataacactcctc 3832646  T

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Target: scaffold0034 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 22677 - 22762
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||||| | ||| |||||||||||| ||||||||||||||| || ||||| ||  |||||||||||||||||||||| ||||||    
T  22677 tttttgtgcctagactcacatttctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacgctcctc 22762  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 30567940 - 30567845
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||| ||||||||| | ||| |||||||||||| |||||||||||||||  |   ||| |  ||||||||||||||||||||||||||||||||    
T  30567940 tgctttggtttttgtgcctagactcacatttctttgtatattttggttgtcctacgggttgttctataaaatggttgttcaaataacactcctcta 30567845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 42962386 - 42962480
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    |||||| ||||||||||| | | |||||||| | | ||||||||||||||| || ||||| ||  ||||||||||||||||||||||||| ||||    
T  42962386 tgctttggtttttgtgtctaaactcacatttatctgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataacacttctct 42962480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 33374592 - 33374679
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctcta 130  Q
    |||||||||||||||  | ||| |||| |||||||||||||| ||| || || || |||||||||||||||||||||| | |||||||    
T  33374592 tttttgtgtcaagatctatattcctttatatattttggttgtttcacaaattgtcatataaaatggttgttcaaataatattcctcta 33374679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 10811226 - 10811319
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||| || |||||||||| | ||| |||||||| ||||||| ||||||| || ||||| ||    |||||||||||||||||||||||||||    
T  10811226 tgctttggtatttgtgtcaatactcatatttctttgtatatttaggttgtcccaaaagttgtcaacaaaaatggttgttcaaataacactcctc 10811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 54260176 - 54260091
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    |||||||| ||| | |||||||||||| ||||||||||||||| || || || |  || ||||| |||||||||||||||||||||    
T  54260176 tttttgtgccaaaactcacatttctttttatattttggttgtcccacaaattgttctacaaaatagttgttcaaataacactcctc 54260091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 31446055 - 31445997
Alignment:
Q  71 tatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    ||||||||||||||| |  ||||| ||| ||||||||||||||||||||||| ||||||    
T  31446055 tatattttggttgtccctcaagttgtctcataaaatggttgttcaaataacattcctct 31445997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 32631531 - 32631452
Alignment:
Q  42 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataaca 122  Q
    ||||||||| |||||   |||||||||| ||||||||||||||  |||| ||| ||  |||||||||||||||||||||||    
T  32631531 gtttttgtgccaagacctacatttctttatatattttggttgttccata-gttgtcacataaaatggttgttcaaataaca 32631452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 48346917 - 48347005
Alignment:
Q  35 tgctttagtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacac 123  Q
    |||||| ||||||||||||| ||||| |||||||| ||||||| ||||||| || || || ||    ||||| ||||||||||||||||    
T  48346917 tgctttggtttttgtgtcaatattcatatttctttgtatatttaggttgtcccacaaattgtcaacaaaaatagttgttcaaataacac 48347005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 9753316 - 9753403
Alignment:
Q  42 gtttttgtgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctct 129  Q
    ||||||||||||| | ||| || ||||| ||||||| ||||||| || ||||| ||    |||||| |||||||||||||||||||||    
T  9753316 gtttttgtgtcaacactcatatatctttgtatatttaggttgtcccacaagttgtcaacaaaaatgattgttcaaataacactcctct 9753403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 13778537 - 13778620
Alignment:
Q  49 tgtcaagattcacatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaaa 132  Q
    |||||| | ||| |||||||| ||||||| | |||||||| || || ||    |||||||||||||||||||||||||||||||    
T  13778537 tgtcaatactcatatttctttgtatatttagattgtctcacaaattgtcaacaaaaatggttgttcaaataacactcctctaaa 13778620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 37780427 - 37780498
Alignment:
Q  60 acatttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctctaa 131  Q
    |||||||||| ||||||||| ||||| || ||||| | | ||||||||| | ||||||||||| ||||||||    
T  37780427 acatttctttgtatattttgattgtcccacaagttatttcataaaatggatattcaaataacattcctctaa 37780498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 1340154 - 1340112
Alignment:
Q  43 tttttgtgtcaagattcacatttctttctatattttggttgtc 85  Q
    |||||||||||||||  |||||||||| |||||||||||||||    
T  1340154 tttttgtgtcaagatctacatttctttatatattttggttgtc 1340112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 36412242 - 36412307
Alignment:
Q  63 tttctttctatattttggttgtctcataagttctcttataaaatggttgttcaaataacactcctc 128  Q
    ||||||| || ||| |||||||| |||||||| ||  |  ||||||||||||||||||||||||||    
T  36412242 tttctttgtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 32187279 - 32187331
Alignment:
Q  81 ttgtctcataagttctcttata-aaatggttgttcaaataacactcctctaaa 132  Q
    ||||||||||||||||  |||| ||||||||||||||||||||| ||| ||||    
T  32187279 ttgtctcataagttctaatatacaaatggttgttcaaataacacacctataaa 32187331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 44883 - 44915
Alignment:
Q  53 aagattcacatttctttctatattttggttgtc 85  Q
    |||| ||||||||||||||||||||||||||||    
T  44883 aagactcacatttctttctatattttggttgtc 44915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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