View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125_high_7 (Length: 300)
Name: NF5125_high_7
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 8951981 - 8951700
Alignment:
| Q |
1 |
tgttcagtagccaaagacaaagagccaattgcattccaaaaatggagtgaagccaagttctgtcaagcatgaatccataaactgtgattcctgctctatt |
100 |
Q |
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| T |
8951981 |
tgttcagtagccaaagacaaagagccaattgaataccaaaaatggagtgaagccaagttctgtcaagcatgaatccataaactgtgattcctgctctatt |
8951882 |
T |
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| Q |
101 |
gttctccatatatgtcactgcattaaaatgcaagtaattcaggacaaagcaaaatttgactnnnnnnnnnnnntacaagtaataaatttccatttaccta |
200 |
Q |
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| T |
8951881 |
gttctccatatatgtcactgcattaaaatgcaagtaattcaggacaaagc--------act--aaaaagaaaatacaagtaataaatttccatttaccta |
8951792 |
T |
|
| Q |
201 |
aggcctgtctcttatggaatgaaatagtacgtgtttgaattggcatcattttggtgttattcaactcatcttcttcatctcctgattcatct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8951791 |
aggcctgtctcttatggaatgaaatagtacgtgtttgaattggcatcattttggtgttattcaactcatcctcttcatctcctgattcatct |
8951700 |
T |
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