View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125_low_2 (Length: 364)
Name: NF5125_low_2
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 50835016 - 50834663
Alignment:
| Q |
10 |
ataatactaaacaaccatgaaaaccattagccactataaa-----cagaaatctggataaagtgttcagaaaaatgtttgaactcatcattcatgacccn |
104 |
Q |
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||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50835016 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccca |
50834917 |
T |
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| Q |
105 |
nnnnnntaatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
204 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834916 |
aaaaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
50834817 |
T |
|
| Q |
205 |
tgcaagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgattgttttaaattatccagaatacatttataactctgaaacagaa--- |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
50834816 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatat |
50834717 |
T |
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| Q |
302 |
tgggattgactaa--------taaatagaaattacatagacacactaaatatat |
347 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50834716 |
tgggattgactaataattatgtaaatagaaattacatagacacactaaatatat |
50834663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 50840837 - 50841190
Alignment:
| Q |
10 |
ataatactaaacaaccatgaaaaccattagccactataaa-----cagaaatctggataaagtgttcagaaaaatgtttgaactcatcattcatgacccn |
104 |
Q |
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||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50840837 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccca |
50840936 |
T |
|
| Q |
105 |
nnnnnntaatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
204 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50840937 |
aaaaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
50841036 |
T |
|
| Q |
205 |
tgcaagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgattgttttaaattatccagaatacatttataactctgaaacagaa--- |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
50841037 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatat |
50841136 |
T |
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| Q |
302 |
tgggattgactaa--------taaatagaaattacatagacacactaaatatat |
347 |
Q |
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| T |
50841137 |
tgggattgactaataattatgtaaatagaaattacatagacacactaaatatat |
50841190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 11729886 - 11729632
Alignment:
| Q |
10 |
ataatactaaacaaccatgaaaaccattagccactataaac-----agaaatctggataaagtgttcagaaaaatgtttgaactcatcattcatgacccn |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11729886 |
ataatactaaacaaccatgaaaaccattaaccactataaattacaaagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccta |
11729787 |
T |
|
| Q |
105 |
nnnnnntaatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729786 |
aaaaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
11729687 |
T |
|
| Q |
205 |
tgcaagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgatt |
259 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11729686 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgatt |
11729632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 23740198 - 23739944
Alignment:
| Q |
10 |
ataatactaaacaaccatgaaaaccattagccactataaac-----agaaatctggataaagtgttcagaaaaatgtttgaactcatcattcatgacccn |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23740198 |
ataatactaaacaaccatgaaaaccattaaccactataaattacaaagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccta |
23740099 |
T |
|
| Q |
105 |
nnnnnntaatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740098 |
aaaaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
23739999 |
T |
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| Q |
205 |
tgcaagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgatt |
259 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23739998 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgatt |
23739944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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