View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125_low_3 (Length: 363)
Name: NF5125_low_3
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 56284610 - 56284413
Alignment:
| Q |
45 |
atggtgggggatatggaatactcccccaccttaaaaggcgactcgaaagagtattagattagcgtaacaaatcgtgcagtcacaaaaataatatttcctt |
144 |
Q |
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| T |
56284610 |
atggtgggtgatatggaatactcccccgccttaaaaggcgactcgaaagagtattagattagcgtaacaaatcgtgcagtcacaaaaataatatttcctt |
56284511 |
T |
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| Q |
145 |
tgagtttctttaaatttaattagaaaataagatatgtatttatggaacatgaaaatgatgaa-nnnnnnnattaaattcatatttaattcgtccatga |
241 |
Q |
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| T |
56284510 |
tgaatttctttaaatttaattagaaaataagatatgtatttatggaacatgaaaatgatgaattttttttattaaattcatatttaattcatccatga |
56284413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 56284366 - 56284311
Alignment:
| Q |
293 |
ttaacaatgttctgaacatttttgggtattttccttaggtggatcatgttaataag |
348 |
Q |
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| T |
56284366 |
ttaacaatgttctgaacatttttgggtattttccttaggtggatcatgttaataag |
56284311 |
T |
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