View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5125_low_4 (Length: 315)
Name: NF5125_low_4
Description: NF5125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5125_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 48983100 - 48983386
Alignment:
| Q |
18 |
aatttgtaaaccgtacttagtcaagttccatcacctggtggcaatggcattcattttgggagctgagacatagttcacttaattaattaacacgcttttg |
117 |
Q |
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| T |
48983100 |
aatttgtaaaccgtacttagtcaagttccatcacctggtggcaatggcattcattttgggagctgagacatagttcacttaattaattaacacgcttttg |
48983199 |
T |
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| Q |
118 |
gtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgatgttgtagagatgacttgtgagggtgaggcagtgtcactcact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
48983200 |
gtaaaggaaaagaaacaagtacatttttaccatgttggtgttatttgtagcaattgatgttgtagagatgacttgtgagggtgaggcattg----tcact |
48983295 |
T |
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| Q |
218 |
cagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcgtgcacacgacttgtcttttcatcacctatgcta |
308 |
Q |
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| T |
48983296 |
cagtcttatggtgatctgtacttatgattgatttaagaattcaagggaatcattttcgcgcacacgacttgtcttttcatcacctatgcta |
48983386 |
T |
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