View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5126-Insertion-1 (Length: 408)

Name: NF5126-Insertion-1
Description: NF5126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5126-Insertion-1
NF5126-Insertion-1
[»] chr3 (18 HSPs)
chr3 (12-408)||(679243-679640)
chr3 (166-408)||(751050-751290)
chr3 (8-168)||(747402-747562)
chr3 (12-159)||(2501797-2501944)
chr3 (12-149)||(2659420-2659557)
chr3 (45-161)||(7324687-7324803)
chr3 (43-161)||(2491753-2491871)
chr3 (43-164)||(9594898-9595019)
chr3 (43-161)||(9566094-9566212)
chr3 (40-149)||(2644633-2644742)
chr3 (43-152)||(7443269-7443378)
chr3 (43-161)||(2474776-2474895)
chr3 (54-161)||(9562235-9562342)
chr3 (43-153)||(754888-754998)
chr3 (168-328)||(2632504-2632659)
chr3 (43-141)||(7334560-7334658)
chr3 (43-168)||(2631013-2631138)
chr3 (43-161)||(2476308-2476426)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 679640 - 679243
Alignment:
Q  12 cctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679640 cctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggttt 679541  T
Q  112 gtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679540 gtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatat 679441  T
Q  212 gttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttcta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679440 gttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttcta 679341  T
Q  312 aaacttatagtgagtttgaaatatagttatatgcctcattttca-nnnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatttgag 408  Q
    |||||||||||||||||||||| |||||||||||||||||||||           |||||||||||| ||||||||||||||||||||||||||||||    
T  679340 aaacttatagtgagtttgaaatgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgag 679243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 166 - 408
Target Start/End: Complemental strand, 751290 - 751050
Alignment:
Q  166 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  266 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  366 ctttctagttcttagaattagaagaatgctgcgtatatttgag 408  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  751091 -tttctagttcttagaattagaagaatgctgcgtatatttgag 751050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 747562 - 747402
Alignment:
Q  8 acttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  747562 acttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagag 747463  T
Q  108 gtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatt 168  Q
    |||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  747462 gttttttttaatactttgggggctgattattggaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 2501797 - 2501944
Alignment:
Q  12 cctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggttt 111  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||   ||||| || |||     
T  2501797 cctcctttggagaatcacgaatggacatcactaagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagtta 2501896  T
Q  112 gtgttaatactttgggggatgattattggacaagaatagagggcatcc 159  Q
    | |||||||||||||||  ||||||||||| ||  ||||||| |||||    
T  2501897 gggttaatactttggggactgattattggagaaagatagaggacatcc 2501944  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 2659557 - 2659420
Alignment:
Q  12 cctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggttt 111  Q
    |||||||||  |||||||| |||| ||| |||||||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | ||     
T  2659557 cctcctttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgatta 2659458  T
Q  112 gtgttaatactttgggggatgattattggacaagaata 149  Q
    |||||||||||||||||  ||||||||||| |||||||    
T  2659457 gtgttaatactttggggactgattattggagaagaata 2659420  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
Q  45 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 144  Q
    |||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||    
T  7324803 agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa 7324704  T
Q  145 gaatagagggcatccca 161  Q
    ||||||||| |||||||    
T  7324703 gaatagaggacatccca 7324687  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 2491753 - 2491871
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    |||||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||    
T  2491753 taagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggac 2491852  T
Q  143 aagaatagagggcatccca 161  Q
    ||||||  ||| |||||||    
T  2491853 aagaatcaaggacatccca 2491871  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 9595019 - 9594898
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    ||||||| || ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  ||||||||||||    
T  9595019 taagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggac 9594920  T
Q  143 aagaatagagggcatcccacat 164  Q
    ||||||||||| ||||||||||    
T  9594919 aagaatagaggacatcccacat 9594898  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 9566212 - 9566094
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    |||| ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  ||||||||||||    
T  9566212 taagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggac 9566113  T
Q  143 aagaatagagggcatccca 161  Q
    ||||||||||| |||||||    
T  9566112 aagaatagaggacatccca 9566094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 2644742 - 2644633
Alignment:
Q  40 cactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattg 139  Q
    |||||||||||||||||||||| ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  |||||||||    
T  2644742 cactaagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattg 2644643  T
Q  140 gacaagaata 149  Q
    ||||||||||    
T  2644642 gacaagaata 2644633  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 7443378 - 7443269
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    |||| ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  |||||||||||     
T  7443378 taagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggag 7443279  T
Q  143 aagaatagag 152  Q
    ||||||||||    
T  7443278 aagaatagag 7443269  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 2474776 - 2474895
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattgga 141  Q
    |||||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| |||||||||||    
T  2474776 taagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattgga 2474875  T
Q  142 caagaatagagggcatccca 161  Q
    |||||||||||| |||||||    
T  2474876 caagaatagaggacatccca 2474895  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  54 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 153  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  154 gcatccca 161  Q
     |||||||    
T  9562242 acatccca 9562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 754998 - 754888
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    |||||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  ||||||||||||    
T  754998 taagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggac 754899  T
Q  143 aagaatagagg 153  Q
    |||||||||||    
T  754898 aagaatagagg 754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 328
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  168 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 263  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  264 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 328  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 7334658 - 7334560
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 141  Q
    ||||||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 2631013 - 2631138
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    |||||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  |||||||||||     
T  2631013 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaa 2631112  T
Q  143 aagaatagagggcatcccacattatt 168  Q
    ||||||||| | ||||||| ||||||    
T  2631113 aagaatagacgacatcccatattatt 2631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 2476308 - 2476426
Alignment:
Q  43 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 142  Q
    |||||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  ||||||||||||    
T  2476308 taagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggac 2476407  T
Q  143 aagaatagagggcatccca 161  Q
    ||||||  ||| |||||||    
T  2476408 aagaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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