View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5126_high_3 (Length: 483)
Name: NF5126_high_3
Description: NF5126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5126_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 29 - 483
Target Start/End: Complemental strand, 42126687 - 42126233
Alignment:
| Q |
29 |
aaaggaactgtgtttctgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagacccgtctctag |
128 |
Q |
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| T |
42126687 |
aaaggaactgtgtttctgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagacccgtctctag |
42126588 |
T |
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| Q |
129 |
tttcaattggtgatgaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattggccg |
228 |
Q |
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| T |
42126587 |
tttcaattggtgatgaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattggccg |
42126488 |
T |
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| Q |
229 |
aaattcttcgattggaccttatgatgttattcaaaaaggaagtattatcaaagaaggagctgagatacaaccactacaaaaagttgaaggaggccaacat |
328 |
Q |
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| T |
42126487 |
aaattcttcgattggaccttatgctgttattcaaaaaggaagtattatcaaagaaggagctgagatacaaccactacaaaaagttgaaggaggccaacat |
42126388 |
T |
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| Q |
329 |
gttcttaaaactgcaaagcttaataatgttaaagaggttagttccaagcagcaaaacattttatattccaataccatgcaaaacttttaaatttgttttc |
428 |
Q |
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| T |
42126387 |
gttcttaaaactgcaaagcttaataatgttaaagaggttagttccaagcaccaaaacattttatattccaataccatgcaaaacttttaaatttgttttc |
42126288 |
T |
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| Q |
429 |
cggtaattagatgcaagaatccatgctttattgctcaaaacatcattccatatga |
483 |
Q |
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| T |
42126287 |
cggtaattagatgcaagaatccatgctttattgctcaaaacatcattccatatga |
42126233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 31 - 276
Target Start/End: Complemental strand, 24929980 - 24929735
Alignment:
| Q |
31 |
aggaactgtgtttctgaattactggtttgagatacttggtgcaagaattggttcctcagttttgattgacacggttgacatcacagacccgtctctagtt |
130 |
Q |
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|||||| |||||||| || ||||||||||| || | || ||||||||||| ||||||||| || |||| || ||||||||||| ||||| |||| || |
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| T |
24929980 |
aggaacagtgtttctaaagtactggtttgaaatgttgggagcaagaattggatcctcagttctgcttgatacagttgacatcacggacccaactctggtg |
24929881 |
T |
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| Q |
131 |
tcaattggtgatgaagctgtcatctctgaaggggttttggttcaaagccatgaggtaaaaaatggaattcttagtctccatcctataaggattggccgaa |
230 |
Q |
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||||| || |||||||||||| | | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |||||| | |
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| T |
24929880 |
tcaatcggagatgaagctgtcgttgcagaaggtgttttggttcaaagccatgaggtaaagaatggaattctaagtctccatcccattaagattggaaaat |
24929781 |
T |
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| Q |
231 |
attcttcgattggaccttatgatgttattcaaaaaggaagtattat |
276 |
Q |
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|||||| ||||||||||||| |||| ||||||| |||||| |||| |
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| T |
24929780 |
gttcttctattggaccttatgctgttgttcaaaacggaagtgttat |
24929735 |
T |
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