View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5126_high_4 (Length: 430)
Name: NF5126_high_4
Description: NF5126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5126_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 38830879 - 38831293
Alignment:
| Q |
1 |
tcaaggttagctcagcttcacatgaacttcctattacctaaatcatgaggtattgccatgtgcttaaagaaggagaaaaaacctagcgcaagtggttagt |
100 |
Q |
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| T |
38830879 |
tcaaggttagctcagcttcacatgaacttcctattacctaaatcataaggtattgccatgtgcttaaagaaggagaaaaaacctagcgcaagtggttagt |
38830978 |
T |
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| Q |
101 |
gcgcagattgtgtaagcgttgtaaactccggataagaagttcaatttcttataataaacaatcaacaaagggtcttttgaaaag-nnnnnnnnttaagta |
199 |
Q |
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| T |
38830979 |
gcgcagattgtgtaagcgttgtaaactccggataagaagttcaatttcttataataaacaatcaacaaagggtcttttgaaaagaaaaaaaaattaagta |
38831078 |
T |
|
| Q |
200 |
aaagggtttgtaactaattaacaaacatataccaaattaaatagcaattatatatatagtaactcaccttaacttttctcttcccatgaggattattctt |
299 |
Q |
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| T |
38831079 |
aaagggtttgtaactaattaacaaacatataccaaattaaatagcaattat-----------ctcaccttcacttttctcttcccatgaggattattctt |
38831167 |
T |
|
| Q |
300 |
tgattgagatgatgattttcttcctttctcaccttccttaggcaatggattcggcacaacggattcatctcttttgctaattatctcttccacacgactc |
399 |
Q |
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| T |
38831168 |
tgattgagatgatgattttcttcctttctcaccttccttaggcaatggattcggcacaacggattcatctcttttgctaattatctcttccacacgactc |
38831267 |
T |
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| Q |
400 |
gaacttgaatctgaagaataatctac |
425 |
Q |
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| T |
38831268 |
gaacttgaatctgaagaataaactac |
38831293 |
T |
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