View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5126_high_5 (Length: 392)
Name: NF5126_high_5
Description: NF5126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5126_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 17075396 - 17075755
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
113 |
Q |
| |
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|||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||| |
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| T |
17075396 |
catcataatggtgacgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcgga |
17075495 |
T |
|
| Q |
114 |
agaaagtgaatggaattttgcggcatccggtatttagtttgaagaaggtggcgcggttgcccagcaaaggccgggccaccgttctgcacattttaaaatc |
213 |
Q |
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|||||||||| ||||||||||| || |||| ||||| |||| |||||||||||| |||| ||||||| || || | ||| | ||||| |||||||| |
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| T |
17075496 |
agaaagtgaacggaattttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatc |
17075595 |
T |
|
| Q |
214 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
313 |
Q |
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||||| ||||||||||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||| |
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| T |
17075596 |
taaattgagaaaattacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaac |
17075695 |
T |
|
| Q |
314 |
aatgattgggttaattgggtggcggtgcatgggaatgagaaggttgtgattgatgatgtc |
373 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
17075696 |
aatgattgggttaattgggtggcagtgcatggaaatgagaaggttgtgtttgatgatgtc |
17075755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 11053470 - 11053702
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagagg |
112 |
Q |
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||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| || || | | | || || |
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| T |
11053470 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcgg |
11053568 |
T |
|
| Q |
113 |
aagaaagtgaatggaattttgcggcatccggtatttagtttgaagaaggtggcgcggttgcccagcaaaggccgggccaccgttctgcacattttaaaat |
212 |
Q |
| |
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|||||||||||||| || ||||||| |||| |||||||||| ||||||||||||||||| ||||||| ||| ||||| || | || || ||||||| |
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| T |
11053569 |
aagaaagtgaatggggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaat |
11053668 |
T |
|
| Q |
213 |
ctaaatcgagaaaattacaaggttcggatcgtct |
246 |
Q |
| |
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|||||||||| |||||||||||||| || ||||| |
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| T |
11053669 |
ctaaatcgaggaaattacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 11064036 - 11064166
Alignment:
| Q |
242 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcggtgc |
341 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |
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| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
342 |
atgggaatgagaaggttgtgattgatgatgt |
372 |
Q |
| |
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||| ||||||||| || ||| |||||||||| |
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| T |
11064136 |
atgagaatgagaaagtagtggttgatgatgt |
11064166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 17684263 - 17683905
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttat--aaaga- |
110 |
Q |
| |
|
||||||||||| | ||||||||||||||| ||||||||||||||||| | |||||||||||||||| || |||| | | ||| || | ||| | |
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| T |
17684263 |
catcatcatggtgacgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcctattt-----tccaatccgatatttgtgcaaacaa |
17684169 |
T |
|
| Q |
111 |
--ggaagaaagtgaatggaattttgcggcatccggtatttagtttgaagaaggtggcgcggttgcccagcaaaggccgggccaccgttctgcacatttta |
208 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||||| |||||||||| |||||| ||||||| ||| |||||||| | || || ||| |
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|
| T |
17684168 |
acggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatctta |
17684069 |
T |
|
| Q |
209 |
aaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcgg |
308 |
Q |
| |
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|||||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||| |
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| T |
17684068 |
aaatctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcgg |
17683969 |
T |
|
| Q |
309 |
ttaacaatgattgggttaattgggtggcggtgcatgggaatgagaaggttgtgattgatgatgt |
372 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| || | | |||||||||| |
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| T |
17683968 |
ttaataatgattgggttaattgggtggcagtgcatgggaatgagaaagtagcggttgatgatgt |
17683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 357
Target Start/End: Complemental strand, 36160061 - 36159902
Alignment:
| Q |
198 |
tgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctc |
297 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| ||||| || |
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| T |
36160061 |
tgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagttcttc |
36159962 |
T |
|
| Q |
298 |
gtcggggtcggttaacaatgattgggttaattgggtggcggtgcatgggaatgagaaggt |
357 |
Q |
| |
|
|| | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
36159961 |
ttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 26741893 - 26741535
Alignment:
| Q |
14 |
catcatcatggagtcgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagagga |
113 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||| |
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|
| T |
26741893 |
catcatcatggtgatgctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcgga |
26741794 |
T |
|
| Q |
114 |
agaaagtgaatggaattttgcggcatccggtatttagtttgaagaaggtggcgcggttgcccagcaaaggccgggccaccgttctgcacattttaaaatc |
213 |
Q |
| |
|
|||||||||||| || || ||| | ||||| |||||||||| ||||||| ||| ||||| |||||| || |||| ||| | ||||| |||||||| |
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|
| T |
26741793 |
agaaagtgaatgagatcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatc |
26741694 |
T |
|
| Q |
214 |
taaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaac |
313 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||| |
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|
| T |
26741693 |
taagtcgagaaaattacaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaac |
26741594 |
T |
|
| Q |
314 |
aatgattgggttaattgggtggcggtgcatgggaatgagaaggttgtgattgatgatgt |
372 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
26741593 |
aacgattgggttaattgggtggaagtgcatgggaatgagaaggttgtggttgatgatgt |
26741535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 107 - 370
Target Start/End: Original strand, 10559739 - 10560002
Alignment:
| Q |
107 |
aagaggaagaaagtgaatggaattttgcggcatccggtatttagtttgaagaaggtggcgcggttgcccagcaaaggccgggccaccgttctgcacattt |
206 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||| |||||||||| ||||||| || | |||| ||||||| | |||||||| | ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
207 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
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|
| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
307 |
ggttaacaatgattgggttaattgggtggcggtgcatgggaatgagaaggttgtgattgatgat |
370 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgtagttgatgat |
10560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10558419 - 10558490
Alignment:
| Q |
13 |
acatcatcatggagtcgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggccttttgc |
84 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10558419 |
acatcatcatggtgacgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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