View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5126_high_6 (Length: 362)
Name: NF5126_high_6
Description: NF5126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5126_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 347
Target Start/End: Original strand, 13643948 - 13644274
Alignment:
| Q |
21 |
gcgtttgagtacaattctcctcaatatcatgaattgtgactgcaacaatttattgtaactactatttgaaatcctaattttaatttagattttaaataga |
120 |
Q |
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| T |
13643948 |
gcgtttgagtacaattctcctcaatatcatgaattgtgactgcaacaatttattgtaactactatttgaaatcctaattttaatttagattttaaataga |
13644047 |
T |
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| Q |
121 |
gttgtgttgctgatctaagccacgacacaacagttttttgatgttgttaaactaaaacaaaagttcaactgcggccgcttttgactgtgattctcgaaaa |
220 |
Q |
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| T |
13644048 |
gttgtgttgctgatctaagccacgacacaacagttttttgatgttgttaaactaaaacaaaagttcaactgcggccgcttttgactgtgattctcgaaaa |
13644147 |
T |
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| Q |
221 |
tatcaaagatcgaggcatgagaacactatccttaattatgcttgttcaacnnnnnnnnnnnncactatccttattgtgactatagtttaaaacgttaatg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13644148 |
tatcaaagatcgaggcatgagaacactatccttaattatgcttgttcaacaaaaaaaaaaaacactatccttattgtgactatagtttaaaacgttaatg |
13644247 |
T |
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| Q |
321 |
atatataatgatttcaggatgatgatg |
347 |
Q |
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||||||||||||||||||||||||||| |
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| T |
13644248 |
atatataatgatttcaggatgatgatg |
13644274 |
T |
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