View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5127-Insertion-4 (Length: 321)
Name: NF5127-Insertion-4
Description: NF5127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5127-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 2447818 - 2448136
Alignment:
| Q |
8 |
tgaacattattgcatattgcagaatttggcttctttggatcaactgaggtaatgttgatttgttccaaggtaatattgtcacaccctatattggcacaat |
107 |
Q |
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| T |
2447818 |
tgaacattattgcatattgcagaatttggcttctttggatcaactgaggtaatgttgatttgttccaaggtaatattgtcacaccctatattggcacaat |
2447917 |
T |
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| Q |
108 |
ctagaaaaatagcatcatcaccactgcatgttccatatatattactaaatgttacatcactcacttttactgcgtccttctgcaatnnnnnnngtaaaag |
207 |
Q |
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| T |
2447918 |
ctagaaaaatagcatcatcaccactgcatgttccatagatattactaaatgttacatcactcacttttactgcgtccttctgcaataaaaaaagtaaaag |
2448017 |
T |
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| Q |
208 |
caaaatttaggcatattattattcattaaca-----aaatcaatcaacatgaagtaagggagaaaaaatattaacctgttctccacctctcatgtaatgt |
302 |
Q |
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| T |
2448018 |
caaaatttaggcatattattattcattaacaaaatcaaatcaatcaacatgaagtaagggagaaaaaatattaacctgttctccacctctcatgtaatgt |
2448117 |
T |
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| Q |
303 |
tgttgaatagatatagggt |
321 |
Q |
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| T |
2448118 |
tgttgaatagatatagggt |
2448136 |
T |
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