View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5127-Insertion-5 (Length: 257)

Name: NF5127-Insertion-5
Description: NF5127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5127-Insertion-5
NF5127-Insertion-5
[»] chr6 (3 HSPs)
chr6 (8-257)||(4043238-4043459)
chr6 (126-172)||(16180486-16180531)
chr6 (124-169)||(3880239-3880284)
[»] chr1 (7 HSPs)
chr1 (124-169)||(30762016-30762061)
chr1 (126-167)||(10605106-10605147)
chr1 (124-172)||(11439647-11439695)
chr1 (124-172)||(27102588-27102636)
chr1 (125-164)||(49820570-49820609)
chr1 (126-172)||(19599056-19599101)
chr1 (124-169)||(32882772-32882817)
[»] chr2 (7 HSPs)
chr2 (129-172)||(22884746-22884789)
chr2 (130-172)||(27740394-27740435)
chr2 (124-169)||(4975154-4975199)
chr2 (124-169)||(4993062-4993107)
chr2 (124-169)||(25504516-25504560)
chr2 (124-169)||(33533371-33533416)
chr2 (124-172)||(30965922-30965970)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-166)||(426555-426597)
[»] chr5 (5 HSPs)
chr5 (124-169)||(8297879-8297924)
chr5 (124-169)||(23426709-23426754)
chr5 (124-169)||(8731347-8731391)
chr5 (124-172)||(7194928-7194976)
chr5 (124-172)||(26405175-26405223)
[»] chr8 (1 HSPs)
chr8 (124-167)||(2613174-2613217)
[»] chr4 (2 HSPs)
chr4 (126-169)||(21983504-21983546)
chr4 (127-169)||(19814847-19814889)
[»] chr7 (3 HSPs)
chr7 (126-164)||(31409589-31409627)
chr7 (124-169)||(6726046-6726091)
chr7 (129-169)||(47456706-47456745)
[»] chr3 (3 HSPs)
chr3 (127-169)||(823027-823069)
chr3 (124-169)||(46358009-46358054)
chr3 (124-172)||(14280176-14280224)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 4043238 - 4043459
Alignment:
Q  8 gaaagtatatagaacaaaacatttttgcaatctagaccatcaagccgtagctcctcctcctcctcttcaagttgtaatcatagttaaatatatcatatct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  4043238 gaaagtatatagaacaaaacatttttgcaatctagaccatcaagccgtagcttctcctcctcctcttcaagctgtaatcatagttaaatatatcatatct 4043337  T
Q  108 caccaagnnnnnnnnnaacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaaggcggaacactcgaaataggtggaacacccgaaata 207  Q
    ||||            ||||||||||||||||||||||||| |||||||||||||||||| |||| |                  |||| | ||||||||    
T  4043338 cacc----------ttaacagcaaattttatttaaaaatcaaatctctgctcaagacgaataaagac------------------ggaatatccgaaata 4043409  T
Q  208 aactcgataaaaaacacccctacacaccgcatctagccacgtcatgcctt 257  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4043410 aactcgataaaaaacacccctacacaccacatctagccacgtcatgcctt 4043459  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 16180486 - 16180531
Alignment:
Q  126 cagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16180486 cagcaaattttatt-aaaaatcagatctctgctcaagacgaacaaag 16180531  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 3880239 - 3880284
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||| ||||||||||| || ||||||||| ||||||||||||||||    
T  3880239 aacaacaaattttattaaacaatcagatccctgctcaagacgaaca 3880284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 30762016 - 30762061
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||||||||||||||||||  |||||||||||||||    
T  30762016 aacagcaaattttatttaaaaatcagatccttgctcaagacgaaca 30762061  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 10605147 - 10605106
Alignment:
Q  126 cagcaaattttatttaaaaatcagatctctgctcaagacgaa 167  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  10605147 cagcaaattttatttaacaatcagatccctgctcaagacgaa 10605106  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 11439647 - 11439695
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    |||| ||||||||||| || || ||||||||||||||||||||||||||    
T  11439647 aacaacaaattttattaaacaaccagatctctgctcaagacgaacaaag 11439695  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 27102636 - 27102588
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    |||||||||||||||| || || |||||||||| |||||||||||||||    
T  27102636 aacagcaaattttattaaacaaccagatctctgttcaagacgaacaaag 27102588  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 49820609 - 49820570
Alignment:
Q  125 acagcaaattttatttaaaaatcagatctctgctcaagac 164  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  49820609 acagcaaattttatttaacaatctgatctctgctcaagac 49820570  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 19599101 - 19599056
Alignment:
Q  126 cagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  19599101 cagcaaaatttatt-aaaaaccagatctctgctcaagacgaacaaag 19599056  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 32882817 - 32882772
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||||| || ||||| ||| ||||||||||||||||    
T  32882817 aacagcaaattttattaaacaatcacatccctgctcaagacgaaca 32882772  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 22884746 - 22884789
Alignment:
Q  129 caaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  22884746 caaattttatttaaaaaccaaatctctgctcaagacgaacaaag 22884789  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 27740435 - 27740394
Alignment:
Q  130 aaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  27740435 aaattttatttaaaaaccagat-tctgctcaagacgaacaaag 27740394  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 4975199 - 4975154
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||| ||||||||||||||  ||||| |||||||||||||||||||    
T  4975199 aacaacaaattttatttaaccatcaggtctctgctcaagacgaaca 4975154  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 4993107 - 4993062
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||| ||||||||||||||  ||||| |||||||||||||||||||    
T  4993107 aacaacaaattttatttaaccatcaggtctctgctcaagacgaaca 4993062  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 25504516 - 25504560
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||    
T  25504516 aacagcaaattttatt-aaaaatcagatccctgctcaagacaaaca 25504560  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 33533371 - 33533416
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||    
T  33533371 aacaacaaattttatttaacagccagatctctgctcaagacgaaca 33533416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 30965922 - 30965970
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    ||||| ||| |||||||||||| |||||| || ||||||||||||||||    
T  30965922 aacagaaaaatttatttaaaaaccagatccctactcaagacgaacaaag 30965970  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 426555 - 426597
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacga 166  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  426555 aacagcaaattttatttaaaaatcagatccctactcaagacga 426597  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 8297924 - 8297879
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||||| || |||||||||||| |||||||||||||    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaaca 8297879  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 23426754 - 23426709
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||    
T  23426754 aacagcaaattttatttaaaaatcagattgctgctcaagaggaaca 23426709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 8731391 - 8731347
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||    
T  8731391 aacagcaaattttatt-aaaaatcagatccctgctcaagacaaaca 8731347  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 7194928 - 7194976
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    |||||||||||||||| || || |||||| || ||||||||||||||||    
T  7194928 aacagcaaattttattaaacaaccagatccctactcaagacgaacaaag 7194976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 26405175 - 26405223
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    |||| ||||||||||| || || ||||| ||||||||||||||||||||    
T  26405175 aacaacaaattttattaaacaaccagatttctgctcaagacgaacaaag 26405223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 2613174 - 2613217
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaa 167  Q
    ||||||||||||||||||| ||||||||| || |||||||||||    
T  2613174 aacagcaaattttatttaacaatcagatccctactcaagacgaa 2613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 21983504 - 21983546
Alignment:
Q  126 cagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  21983504 cagcaaattttatt-aaaaatcagatccctgctcaagacgaaca 21983546  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 19814847 - 19814889
Alignment:
Q  127 agcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||||||||||||||| || |||||| ||||||||||||||||    
T  19814847 agcaaattttatttaacaaccagatccctgctcaagacgaaca 19814889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 31409589 - 31409627
Alignment:
Q  126 cagcaaattttatttaaaaatcagatctctgctcaagac 164  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  31409589 cagcaaattttatctaaaaaccagatctctgctcaagac 31409627  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 6726046 - 6726091
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||| ||||||||||| || || |||||||||||||||||||||||    
T  6726046 aacaacaaattttattaaacaaccagatctctgctcaagacgaaca 6726091  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 47456706 - 47456745
Alignment:
Q  129 caaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  47456706 caaattttatt-aaaaaccagatctctgctcaagacgaaca 47456745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 823027 - 823069
Alignment:
Q  127 agcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||    
T  823027 agcaaattttattaaaaaaccagatcgctgctcaagacgaaca 823069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 46358009 - 46358054
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaaca 169  Q
    |||| |||||||||||||| || |||||| ||||||||||||||||    
T  46358009 aacaacaaattttatttaacaaccagatccctgctcaagacgaaca 46358054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 14280176 - 14280224
Alignment:
Q  124 aacagcaaattttatttaaaaatcagatctctgctcaagacgaacaaag 172  Q
    ||||| |||| ||||| || |||||||||| ||||||||||||||||||    
T  14280176 aacagtaaatattattaaacaatcagatctttgctcaagacgaacaaag 14280224  T

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