View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5127-Insertion-6 (Length: 186)
Name: NF5127-Insertion-6
Description: NF5127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5127-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 28659960 - 28660134
Alignment:
| Q |
8 |
gttcccccattgaaatccactgaaataggaactgttgtcaccataaaattcttcacctgaacatattcatcgttgacagaatgtcctttggctggttctt |
107 |
Q |
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| T |
28659960 |
gttccaccattgaaatccattgaaataggaactgctgtcaccataaaatccttcgcctgaacatattcatcgttgacagaatgtccttcgactggttatt |
28660059 |
T |
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| Q |
108 |
taatgtattcttccaacgtggcaccaaaactatcaacaacattcacgctaggtaactcacccttggtgtcattca |
182 |
Q |
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| T |
28660060 |
taatgtattcttccaatgtggcaccaaaactatcagcaacgttcacgctaggtaactcacccttagtgacattca |
28660134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 5e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 5646251 - 5646414
Alignment:
| Q |
8 |
gttcccccattgaaatccactgaaataggaactgttgtcaccataaaattcttcacctgaacatattcatcgttgacagaatgtcctttggctggttctt |
107 |
Q |
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| T |
5646251 |
gttccgccattgaaatccattgaaggaggagctgttgtcacaattaaattcttcacctggacatattcaccggtgataggatgtccttcgactagatctt |
5646350 |
T |
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| Q |
108 |
taatgtattcttccaacgtggcaccaaaactatcaacaacattcacgctaggtaactcaccctt |
171 |
Q |
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| T |
5646351 |
tcatgtattcttccattgtggcaacaaaactatcagcaacattcacgttaggtaactgaccctt |
5646414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 18179938 - 18180049
Alignment:
| Q |
53 |
aaattcttcacctgaacatattcatcgttgacagaatgtcctttggctggttctttaatgtattcttccaacgtggcaccaaaactatcaacaacattca |
152 |
Q |
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| T |
18179938 |
aaattcttcaattggacatattcatcggtgacagaatgtccttcgactggttctttaatgtattcttccattgtagcaacaaaactgtcagcaacattca |
18180037 |
T |
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| Q |
153 |
cgctaggtaact |
164 |
Q |
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| T |
18180038 |
cgttcggtaact |
18180049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 24840980 - 24840908
Alignment:
| Q |
99 |
ctggttctttaatgtattcttccaacgtggcaccaaaactatcaacaacattcacgctaggtaactcaccctt |
171 |
Q |
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| T |
24840980 |
ctggttctttaatgtatacttctattgtggcgacaaaactatcagcaacattcacgttaggtaactgaccctt |
24840908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 1368706 - 1368659
Alignment:
| Q |
107 |
ttaatgtattcttccaacgtggcaccaaaactatcaacaacattcacg |
154 |
Q |
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| T |
1368706 |
ttaatgtattcttccattgtggcaacaaaactatcaacaacattcacg |
1368659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 31379670 - 31379595
Alignment:
| Q |
16 |
attgaaatccactgaaataggaactgttgtcaccataaaattcttcacctgaacatattcatcgttgacagaatgt |
91 |
Q |
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||||||||| | |||| |||||||||||| || || |||||||||||||| ||| ||||| || ||||||||||| |
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| T |
31379670 |
attgaaatcaattgaaggaggaactgttgtgacgattaaattcttcacctggacagattcaccggtgacagaatgt |
31379595 |
T |
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