View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5127-Insertion-7 (Length: 187)
Name: NF5127-Insertion-7
Description: NF5127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5127-Insertion-7 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 7e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 6124265 - 6124445
Alignment:
| Q |
7 |
agattccaatgagaagcacatgtgtatgggttccatgacttttctctgactacccaagtaatagtcatcgctagctacctccaatgcaagatcatgtatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6124265 |
agattccaatgagaagcacatgtgtatgggttccatgacgtttctctgactacccaagtaatagtcatcgctagctacctccaatgcaagatcatgtatc |
6124364 |
T |
|
| Q |
107 |
aaaccatgcattttaaaattaactagattaccatattcatccatttttggatcttggaaaaatgacatcttcagaagagta |
187 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6124365 |
aaaccatgcattttaaaactaactagattaccacattcatccatttttggatcttggaaaaatgacatcttcagaagagta |
6124445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 6115096 - 6115020
Alignment:
| Q |
111 |
catgcattttaaaattaactagattaccatattcatccatttttggatcttggaaaaatgacatcttcagaagagta |
187 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6115096 |
catgcattttaaaactaactacatttccatattcatccatttttggatcttggataaatgacatcctcagaagagta |
6115020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University