View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5127_high_2 (Length: 249)
Name: NF5127_high_2
Description: NF5127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5127_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 5931596 - 5931814
Alignment:
| Q |
11 |
attcttaattgtaacaactacctttggaaaaatagcacttatagtgtctctagcattaaacatcacaattagtagtattgagagttttaaggtaatagct |
110 |
Q |
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| T |
5931596 |
attcttaattgtaacaactacctttggaaaaatagcacttatagtgtctctagcattaaacattacaattagtagtattgagagttttaaggtaatagct |
5931695 |
T |
|
| Q |
111 |
tttggatcagccatagctagatgcacaatacctacaaaacttatacatgtcgttatttatagaacactaacaatatagtctaactccttccaaattttaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5931696 |
tttggatcagccatagctagatgcacaatacctacaaaacttatacatgttgttatttatagaacactaacaatatagtctaactccttccaaattttaa |
5931795 |
T |
|
| Q |
211 |
aaaggaatcatatttaata |
229 |
Q |
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||||||||||||||||||| |
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| T |
5931796 |
aaaggaatcatatttaata |
5931814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 5922465 - 5922634
Alignment:
| Q |
11 |
attcttaattgtaacaactacctttggaaaaatagcacttatagtgtctctagcattaaacatcacaattagtagtattgagagttttaaggtaatagct |
110 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5922465 |
attcttaattgtaacaactacctttggaaaaatagcacttatagtgtatctagcattaaacattacaattagtagtattgagagttttaaggtaatagct |
5922564 |
T |
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| Q |
111 |
tttggatcagccatagctagatgcacaatacctacaaaacttatacatgtcgttatttatagaacactaa |
180 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
5922565 |
tttggatcagccatagctagatgcacaatacctacgaaacttatacctgtcgttatttatagaacactaa |
5922634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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