View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5127_low_1 (Length: 528)
Name: NF5127_low_1
Description: NF5127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5127_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 7340903 - 7341376
Alignment:
| Q |
12 |
attctgattattgtacaaaatctaaagtatgaaacaaagtcatagcgaaaatatgtctatagtaaactaaaatctatattactctcaatgcgaaggatct |
111 |
Q |
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| T |
7340903 |
attctgattattgtacaaaatctaaagtatgaaacaaagtcatagtgaaaatatgtctatagtaaactaaaatctatattactctcaatgcgaaggatct |
7341002 |
T |
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| Q |
112 |
ccatattactctcatttcataaatagagaaaaccataaatctctattacaagagaatagaagaagtacatgagaaaggaa------------------ga |
193 |
Q |
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| T |
7341003 |
ccatattactctcatttcataaatagagaaaaccataaatctctattacaagagaatagaagaagtacatgagaaaggaagagaaggtttatgaaaggga |
7341102 |
T |
|
| Q |
194 |
gaaggtcgatgagttgacaaatattccacacccctttctcttctcaaacttcccttatatattccaatcattggaannnnnnnnnnnngttatcaatttt |
293 |
Q |
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| T |
7341103 |
gaaggtcgatgagttgacaaatattccacacctctttctcttctcaaacttcccttatatattccaatcattggaa--atttttttttgttatcaatttt |
7341200 |
T |
|
| Q |
294 |
ctccaattattggatcaactaacatgtctttttctctaaccattttattggcctcaccttgatgacatggtttttcttcatttggtaccataacaggaac |
393 |
Q |
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| T |
7341201 |
ctccaattattggatcaactaacatgtctttttctctaaccattttattggcctcaccttgatgacatggtttttcttcatttggtaccataacaggaac |
7341300 |
T |
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| Q |
394 |
actttcatccaagtttgaagccgatatcttacgattgtgacttttacgcgacacttgccactttgtttccagaccc |
469 |
Q |
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| T |
7341301 |
actttcatccaagtttgaagccgatatcttacgattgtgagttttacgcgacacttgccactttgtttccagaccc |
7341376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 514
Target Start/End: Original strand, 7341396 - 7341429
Alignment:
| Q |
481 |
tactagctaacaaattacaaattagtttatcttg |
514 |
Q |
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| T |
7341396 |
tactagctaacaaattacaaattagtttatcttg |
7341429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 24805406 - 24805371
Alignment:
| Q |
232 |
tcttctcaaacttcccttatatattccaatcattgg |
267 |
Q |
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| T |
24805406 |
tcttctcaaacttccgttatatattccaatcattgg |
24805371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 26765720 - 26765677
Alignment:
| Q |
226 |
cctttctcttctcaaacttcccttatatattccaatcattggaa |
269 |
Q |
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| T |
26765720 |
cctttctcttttcaaactttccttatatattcaaatcattggaa |
26765677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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