View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5128-Insertion-3 (Length: 436)
Name: NF5128-Insertion-3
Description: NF5128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5128-Insertion-3 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 3767214 - 3767643
Alignment:
| Q |
8 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3767214 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
3767313 |
T |
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| Q |
108 |
actgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcgtta |
207 |
Q |
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| T |
3767314 |
actgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggcatta |
3767413 |
T |
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| Q |
208 |
tggtggatgcaagggattgttgtgatgctaactgtggagacagtaaagtagtggaggactaggagagaagacaataatagtggaagcttaatgaagtgaa |
307 |
Q |
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| T |
3767414 |
tggtggatgcaagagattgttgtgatgctaactgtggagacagtaaagtagtggaggactaggagagaagacaataatagtggaagcttaatgaagtgaa |
3767513 |
T |
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| Q |
308 |
gttaaagaaagtgaggaacaaaattataagaagaggaaagtgaaggaaaaatgacaaatggagtgggatgtagggtacgta-ttttctaactatttcann |
406 |
Q |
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| T |
3767514 |
gttaaagaaagtgaggaacaaaattataagaagaggaaagtgaaggaaaaatgacaaatggagtgggatgtagggtacgtatttttctaactatttcatt |
3767613 |
T |
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| Q |
407 |
nnnnnaacaagtaaaaatgagattatatat |
436 |
Q |
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| T |
3767614 |
tttttaacaagtaaaaatgagattatatat |
3767643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 3781198 - 3781390
Alignment:
| Q |
8 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
107 |
Q |
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| T |
3781198 |
ttttccactcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggacgaacaaaatcg |
3781297 |
T |
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| Q |
108 |
actgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaaggc |
203 |
Q |
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| T |
3781298 |
aaagtgtcttgtttttctgatgaagttgaagtagtgagtgtgttgcaagatatgagaaggaagaagaacaaag---tgaggaaatgttgggaaggc |
3781390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 3776885 - 3777072
Alignment:
| Q |
8 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
107 |
Q |
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| T |
3776885 |
ttttccactaactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
3776984 |
T |
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| Q |
108 |
actgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaag |
201 |
Q |
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| T |
3776985 |
aaggtatcttctttttctaat---gttgaagaagtgagtgtgttacaagagataagaaggaagaagaacaaag---tgaggaaatgtttggaag |
3777072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 3762811 - 3763000
Alignment:
| Q |
9 |
tttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaa |
108 |
Q |
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| T |
3762811 |
tttccacttagtatgtcatgccagtagaatctaaaatggcttagtttttccttcttgtttaggcctaacaacttgcggtctattggacgaacaaaatcaa |
3762910 |
T |
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| Q |
109 |
ctgtgtcttgtttttctgatgaagttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtgatgaggaaatgtttggaag |
201 |
Q |
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| T |
3762911 |
aagtttcttcattttctgatgatgaagttgatgtgagggtgttgcaagaaagtagaaggaagaagaacaaag---tgaggaaatgtttggaag |
3763000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 3751841 - 3752006
Alignment:
| Q |
24 |
tcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatcaactgtgtcttgttttt |
123 |
Q |
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| T |
3751841 |
tcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttcttgttttt |
3751940 |
T |
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| Q |
124 |
ctgatgaa------gttgaagcagagagtgtgttgcaagatatgagaaggaagaagaacaaagtga |
183 |
Q |
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| T |
3751941 |
ctaatgattgtaatgatgttgaagtgagagtgttgcaagagaggagaaggaagaagaacaaagtga |
3752006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 3746008 - 3746107
Alignment:
| Q |
8 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
107 |
Q |
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||||||||||| |||||||||||| | ||| ||||||||||||||||||| | ||||||||| |||||| ||| | ||||||| ||||||||||||| |
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| T |
3746008 |
ttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttaggtgtaacaatttggggtctattgaacgaacaaaatca |
3746107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 3755692 - 3755789
Alignment:
| Q |
8 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
107 |
Q |
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| T |
3755692 |
ttttccactcactatgtcgtgccagtagaatctgaaatgacttagtttttccttc---tttaggcttaataatttgcggtctataggacgaacaaattca |
3755788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 3771450 - 3771569
Alignment:
| Q |
8 |
ttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggacgaacaaaatca |
107 |
Q |
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| T |
3771450 |
ttttccactcgctatctcgtgccagtagaatctgaaatgacttagtttttccttc---tttaggcttaataatttgcggtctataggacgaacaaattca |
3771546 |
T |
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| Q |
108 |
actgtgtcttgtttttctgatga |
130 |
Q |
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| T |
3771547 |
aaagtgtcatcattttctgatga |
3771569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 25985317 - 25985271
Alignment:
| Q |
9 |
tttccactcactatgtcatgccaataaaatttgaaatgacttagctt |
55 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||| |||||||| |
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| T |
25985317 |
tttccactaactatgtcatgccaatagaattttaaatggcttagctt |
25985271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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