View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5128-Insertion-4 (Length: 397)
Name: NF5128-Insertion-4
Description: NF5128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5128-Insertion-4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 8177468 - 8177858
Alignment:
| Q |
7 |
agaatgatcataatgatgagtttttgcaacatggtagtgagtttttggtttctcatgtgcaacttcaagcaaaagggtctagtgagttttggaagaaacc |
106 |
Q |
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| T |
8177468 |
agaatgatcataatgatgagtttttgcaacatggtagtgagtttttggtttctcatgtgcaacttcaagcaaaagggtctagtgagttttggaagaaacc |
8177567 |
T |
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| Q |
107 |
aaatggtttgggatataaaccttgtttgagttttagtaatgattataggagacaaagtgaaagggttttgaaggatagaagaaagtatcttatggttgtt |
206 |
Q |
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| T |
8177568 |
aaatggtttgggatataaaccttgtttgagttttagtaatgattataggagacaaagtgaaagggttttgaaggatagaagaaagtatcttatggttgtt |
8177667 |
T |
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| Q |
207 |
gtttctggtgggatgaatcaacagaggaatcagattgttgatgctgttgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtca |
306 |
Q |
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| T |
8177668 |
gtttctggtgggatgaatcaacagaggaatcagattgttgatgctgttgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtca |
8177767 |
T |
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| Q |
307 |
atgttatttggggtgatgaaaggtatagattaataaattaaatatcgtccttttttcttagtttacgatgattttcgttttctatgttgag |
397 |
Q |
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| T |
8177768 |
atgttatttggggtgatgaaaggtatagattaataaattaaatatcgtccttttttcttagtttacgatgattttcgttttctatgttgag |
8177858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 42936758 - 42936835
Alignment:
| Q |
254 |
tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
331 |
Q |
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| T |
42936758 |
tgttattgctaggattcttggtgctgctttggttgttcctattttgcaagttcatgtcatttggggagatgaaaggta |
42936835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 33700848 - 33700925
Alignment:
| Q |
254 |
tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
331 |
Q |
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| T |
33700848 |
tgttattgctaggattcttggtgctgctttggttgtttctattttgcaagttaatgtcatttgcggagatgaaaggta |
33700925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 33701413 - 33701336
Alignment:
| Q |
254 |
tgttattgctaggattcttggtgctgctttggttgttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
331 |
Q |
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| T |
33701413 |
tgttattcctaggattcttggtgcatctttggttgttcctattttgcaagttaatgtcatttggggagatgaaaggta |
33701336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 88 - 331
Target Start/End: Original strand, 7747441 - 7747684
Alignment:
| Q |
88 |
gtgagttttggaagaaaccaaatggtttgggatataaaccttgtttgagttttagtaatgattataggagacaaagtgaaagggttttgaaggatagaag |
187 |
Q |
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| T |
7747441 |
gtgagttttggaagcaaccagatgggttagggtataagccttgtttggatttcagtaaggattatagaagagaaagtgatgggattgttaagaatagaaa |
7747540 |
T |
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| Q |
188 |
aaagtatcttatggttgttgtttctggtgggatgaatcaacagaggaatcagattgttgatgctgttgttattgctaggattcttggtgctgctttggtt |
287 |
Q |
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| T |
7747541 |
gaggtatcttatggtggttgtttctggagggatgaatcagcagaggaatcaaattgttgatgctgttgttattgctaggattcttggtgctgctttggtt |
7747640 |
T |
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| Q |
288 |
gttcctgttttgcaagtcaatgttatttggggtgatgaaaggta |
331 |
Q |
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| T |
7747641 |
gttcctattttgcaagttaatgtcatttggggagatgaaaggta |
7747684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 28346206 - 28346255
Alignment:
| Q |
254 |
tgttattgctaggattcttg--gtgctgctttggttgttcctgttttgca |
301 |
Q |
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| T |
28346206 |
tgttattgctaggattcttggtgtgatgctttggttgttcctattttgca |
28346255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Complemental strand, 28346452 - 28346423
Alignment:
| Q |
254 |
tgttattgctaggattcttggtgctgcttt |
283 |
Q |
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| T |
28346452 |
tgttattgctaggattcttggtgctgcttt |
28346423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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