View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5128_low_3 (Length: 387)
Name: NF5128_low_3
Description: NF5128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5128_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 503975 - 503625
Alignment:
| Q |
17 |
accaaaaccatatcatagacatgcaaataagatacttacaaatctctcaaacaacgtgtgataacgttgatatagacgttatcacacattgctaggagca |
116 |
Q |
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| T |
503975 |
accaaaaccatatcatagacatgcaaataagatacttacaaatctctcaaacaacatgtgataacgttgatatagacgttatcacacattgctaggagca |
503876 |
T |
|
| Q |
117 |
acttcaactctagatacagcatcagtcatattttgttaagcatctggaccagcaggatcaaggtatctgtgagcatgcaatatgagtagaggagcagctt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
503875 |
acttcaactctagatacaacatcagtcatattttgttaagcatctggaccagcaggatcagggtatctgtgagcatgcaatatgagtagaggagcagctt |
503776 |
T |
|
| Q |
217 |
gaaaacaaatttcagttgcttaaccactacaatgattcaccacagtagtgacagtaatgtttttcctgtgatttaactaacttttttataagttagcaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503775 |
gaaaacaaatttcagttgcttaaccactacaatgattcaccacagtagtgacagtaatgtttttcctgtgatttaactaacttttttataagttagcaaa |
503676 |
T |
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| Q |
317 |
attctgatgattcactacacttttagtgtatatagtagtaacacaatcttt |
367 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503675 |
atactgatgattcactacacttttagtgtatatagtagtaacacaatcttt |
503625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 492059 - 491963
Alignment:
| Q |
97 |
atcacacattgc-taggagcaacttcaactctagatacagcatcagtcatattttgttaagcatctggaccagcaggatcaaggtatctgtgagcatgca |
195 |
Q |
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|||||||||||| | |||||||||||||||||||||||| || ||||||||||||| ||||| ||| |||||| ||||| ||| |||||||||||| |
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| T |
492059 |
atcacacattgcattggagcaacttcaactctagatacaaca--agtcatattttgtgaagcacttggttcagcagagtcaagatat-tgtgagcatgca |
491963 |
T |
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