View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5128_low_5 (Length: 347)
Name: NF5128_low_5
Description: NF5128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5128_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 25639866 - 25640186
Alignment:
| Q |
19 |
taacaatttaaaatctcatatcgcggagcaatgttttttgaagagttgcagatcaaacagggttcattgtgttttggttctttgaatcgcatgttggaga |
118 |
Q |
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| T |
25639866 |
taacaatttaaaatctcagatcgcggagcaatgttttttgaagagttgcggatcaaatagggttcatcgtgttttggttctttgaatcgcatgttggaga |
25639965 |
T |
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| Q |
119 |
gctatgttgtgagtgtaatttgatttagccaataataatagattacttgttgtacaagtaagaagagatagagttcaacaactttcagtttttgacggtt |
218 |
Q |
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| T |
25639966 |
gctatgttgtgagtgtaatttgatttagccaataataatagattacttgttgtacaagtaagaagagatagagttcaacaactttcagtttttgacggtt |
25640065 |
T |
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| Q |
219 |
agttagttggttattgagcaatatagctcccactattttgtgatgtataaataattgaggtgaatgtgaaaatcatcgccagcattttgtgaattgaaat |
318 |
Q |
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| T |
25640066 |
agttaattggttattgagcaatatagctcccactattttgtgatgtataaataattgaggtgaatgtgaaaatcatcgccagcattttgtgaattgaaat |
25640165 |
T |
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| Q |
319 |
tcaatagtggattttcatctc |
339 |
Q |
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| T |
25640166 |
tcaatagtggattttcatctc |
25640186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 26768066 - 26768025
Alignment:
| Q |
251 |
ctattttgtgatgtataaataattgaggtgaatgtgaaaatc |
292 |
Q |
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| T |
26768066 |
ctattttgtgatgtataaatagttgatgttaatgtgaaaatc |
26768025 |
T |
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