View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129-Insertion-1 (Length: 903)
Name: NF5129-Insertion-1
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 512
Target Start/End: Original strand, 20511817 - 20512321
Alignment:
| Q |
8 |
ataagttcccataacctccctggagtagcgaccacaatctcaggtcttgcttttaaaagtctttcctgcttttctggtaaaatacctccaactatagcgg |
107 |
Q |
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| T |
20511817 |
ataagttcccataacctccctggagtagcgaccacaatctcaggtcttgcttttaaaagtctttcctgcttttctggtaaaatacctccaactatagcgg |
20511916 |
T |
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| Q |
108 |
tcaccctaacattaatatgcttggctactgctttcagatgcttggctacctgaaaaagcaattgcagccccaaataataaaattaacagcttctatcatc |
207 |
Q |
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| T |
20511917 |
tcaccctaacattaatatgcttggctactgctttcagatgcttggctacctgaaaaagcaattgcagccccaaataataaaattaacagcttctatcatc |
20512016 |
T |
|
| Q |
208 |
aacaacttttgtggatattataaatcacattaactgtnnnnnnncatatcagattatattttagtcaatgtgattccaaaataggtccaacaaaatcatt |
307 |
Q |
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| T |
20512017 |
aacaacttttgaggatattataaatcacattaactgtaaaaaaacatatgagattatattttagtcaatgtgattccaaaataggtccaacaaaatcatt |
20512116 |
T |
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| Q |
308 |
attagtctcataaaactctgaaattaattatcagtcttgttaatctcttagttgctacaaataaactcagaaatatataagacttgtgagtcataacttc |
407 |
Q |
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| T |
20512117 |
attagtctcataaaactctgaaattaattatcagtcttgttaatctcttagttgctacaaataaactcagaaatatataagacttgtgagtcataacttc |
20512216 |
T |
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| Q |
408 |
tnnnnnnnnctaaacacaacatagttatagaactgtgagtctgcttaaaatacagaagcagaagagtttacacgaaagataaacaaattaagtgtaaact |
507 |
Q |
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| T |
20512217 |
taaaaaaaactaaacacaacatagttatagaactgtgagtctgcttaaaatacagaagcagaagagtttacacgaaagataaacaaattaagtgtaaact |
20512316 |
T |
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| Q |
508 |
ataat |
512 |
Q |
| |
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| T |
20512317 |
ataat |
20512321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 562 - 903
Target Start/End: Original strand, 20512371 - 20512714
Alignment:
| Q |
562 |
ttgtacctaaatttgaacagaagagacttgtaagttgtaactactataaaactagatgcataaacacacaagctcccaaactaattaaaaaccaagaacg |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20512371 |
ttgtacctaaatttgaacagaagagacttgtaagttgtaactactataaaactagatgcataaacacacaagctcccaaactaattaaaaaccaagaacg |
20512470 |
T |
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| Q |
662 |
taaaatcagattaactggcaacaatcgagcaactgagaatcaaatgattagaaagccttgacaatcacctgaagtgcaagttctcttgttggagcaataa |
761 |
Q |
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| T |
20512471 |
taaaatcagattaactggcaacaatcaagcaactgagaatcaaatgattagaaagccttgacaatcacctgaagtgcaagttctcttgttggagcaataa |
20512570 |
T |
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| Q |
762 |
taagactcctcaaaaggcccgtagtagcgtatttttcagcagcttcttcaccatttaccccacttatactttcagccttttcacgctcctccaaaagacg |
861 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20512571 |
taagactcctcaaaaggcccgtagtagcgtatttttcagcagcttcttcaccatttaccccacttatactttcagccttttcacgctcctccaaaagacg |
20512670 |
T |
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| Q |
862 |
ttgc-aaatgggcaaaccaaacgcaagtg-tttaccagatcctg |
903 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
20512671 |
ttgcaaaatgggcaaaccaaacgcaagtgttttaccagatcctg |
20512714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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