View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5129-Insertion-11 (Length: 183)
Name: NF5129-Insertion-11
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129-Insertion-11 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 149; Significance: 6e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 9164784 - 9164956
Alignment:
| Q |
12 |
catcataaagggagtgtagtttgcactaagctatgcttatctttcatcttataagtggaaagaagaacaataaacaattgtagtaaatcgacattaagta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164784 |
catcataaagggagtgtagtttgcactaagctatgctcatctttcatcttataagtggaacgaagaacaataaacaattgtagtaaatcgacattaagta |
9164883 |
T |
|
| Q |
112 |
aaaggaaagg-aagggagaagttaaaagtggaaggaagaataaaacccatacatcgtcatcatcatcatcctc |
183 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9164884 |
aaaggaaaggaaagggagaagttaaaagtgaaaggaagaataaaacccatacatcgtcatcatcagcatcctc |
9164956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 9151964 - 9152118
Alignment:
| Q |
15 |
cataaagggagtgtagtttgcactaagctatgcttatctttcatcttataagtggaaagaagaacaataaacaattgtagtaaatcgacattaagtaaaa |
114 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| || | ||||||||| |
|
|
| T |
9151964 |
cataaagggagtataatttgcactgagctatgcttatctttcatcttataagtggaacaaagaacaacaaa-aattatagtaaatagaaagtaagtaaaa |
9152062 |
T |
|
| Q |
115 |
ggaaaggaagggagaagttaaaagtggaaggaagaataaaacccatacatcgtcatcatc |
174 |
Q |
| |
|
||| ||||||||||| ||||| | ||| | ||||||||||||||||||||| ||||| |
|
|
| T |
9152063 |
gga----aagggagaagtgaaaagagaaagaaggaataaaacccatacatcgtcgtcatc |
9152118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 9179671 - 9179522
Alignment:
| Q |
24 |
agtgtagtttgcactaagctatgcttatctttcatcttataagtggaaagaagaacaataaacaattgtagtaaatcgacattaagtaaaaggaaaggaa |
123 |
Q |
| |
|
|||||| |||||| | ||||||||||||| ||||| |||| ||||||| |||||||| ||| ||||||||||||||| | ||||||| |||| || |
|
|
| T |
9179671 |
agtgtaatttgcattgagctatgcttatcgttcattttattagtggaacaaagaacaacaaaatattgtagtaaatcgaaagtaagtaa----aaagaaa |
9179576 |
T |
|
| Q |
124 |
gggagaagttaaaagtggaaggaagaataaaacccatacatcgtcatcatcatc |
177 |
Q |
| |
|
||||||| | ||||| | ||| | ||||||||| ||||| |||||||| ||||| |
|
|
| T |
9179575 |
gggagaaatgaaaagagaaagaaggaataaaactcatacgtcgtcatcgtcatc |
9179522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University