View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5129-Insertion-3 (Length: 556)

Name: NF5129-Insertion-3
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5129-Insertion-3
NF5129-Insertion-3
[»] chr2 (18 HSPs)
chr2 (199-556)||(31818380-31818739)
chr2 (7-144)||(31817999-31818148)
chr2 (7-144)||(16664583-16664732)
chr2 (7-144)||(22881028-22881177)
chr2 (9-64)||(23814987-23815042)
chr2 (9-64)||(23829835-23829890)
chr2 (9-58)||(20524223-20524272)
chr2 (9-58)||(37130488-37130537)
chr2 (9-61)||(22648660-22648712)
chr2 (9-64)||(22593827-22593882)
chr2 (9-64)||(23769378-23769433)
chr2 (9-64)||(23803357-23803412)
chr2 (13-64)||(28567715-28567766)
chr2 (9-64)||(34827620-34827675)
chr2 (10-64)||(21904967-21905021)
chr2 (10-64)||(25349270-25349324)
chr2 (13-61)||(23203865-23203913)
chr2 (9-49)||(23615121-23615161)
[»] chr8 (11 HSPs)
chr8 (10-144)||(41438748-41438894)
chr8 (10-144)||(29708070-29708216)
chr8 (9-116)||(18735456-18735574)
chr8 (9-64)||(27818276-27818331)
chr8 (10-64)||(15337399-15337453)
chr8 (10-64)||(15426464-15426518)
chr8 (10-64)||(15517768-15517822)
chr8 (9-70)||(22698088-22698149)
chr8 (9-61)||(17426094-17426146)
chr8 (9-61)||(20193152-20193204)
chr8 (9-64)||(15911799-15911854)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-144)||(33240-33389)
[»] chr1 (10 HSPs)
chr1 (7-144)||(23511694-23511843)
chr1 (11-144)||(21076648-21076793)
chr1 (7-144)||(21137739-21137888)
chr1 (7-63)||(4229853-4229909)
chr1 (64-116)||(50826530-50826582)
chr1 (16-116)||(2603414-2603525)
chr1 (9-64)||(21168338-21168393)
chr1 (13-64)||(27902109-27902160)
chr1 (60-112)||(21310878-21310930)
chr1 (9-61)||(22086486-22086538)
[»] scaffold0023 (1 HSPs)
scaffold0023 (10-144)||(116490-116636)
[»] chr3 (12 HSPs)
chr3 (11-144)||(13023962-13024107)
chr3 (18-144)||(22445017-22445155)
chr3 (10-144)||(12844471-12844617)
chr3 (9-113)||(12021407-12021522)
chr3 (9-64)||(132445-132500)
chr3 (9-64)||(12492004-12492059)
chr3 (9-64)||(43135576-43135631)
chr3 (9-61)||(7341456-7341508)
chr3 (9-61)||(7396202-7396254)
chr3 (9-61)||(10792587-10792639)
chr3 (9-61)||(11887346-11887398)
chr3 (9-61)||(14683143-14683195)
[»] scaffold0013 (5 HSPs)
scaffold0013 (7-144)||(107498-107647)
scaffold0013 (7-112)||(129242-129358)
scaffold0013 (23-143)||(129871-130003)
scaffold0013 (23-143)||(144702-144834)
scaffold0013 (64-143)||(136041-136121)
[»] chr7 (12 HSPs)
chr7 (13-144)||(18752739-18752882)
chr7 (9-61)||(18160089-18160141)
chr7 (9-61)||(18174859-18174911)
chr7 (9-61)||(44277664-44277716)
chr7 (9-64)||(10827790-10827845)
chr7 (9-64)||(10864198-10864253)
chr7 (9-64)||(11021582-11021637)
chr7 (9-56)||(40342855-40342902)
chr7 (60-112)||(11989331-11989383)
chr7 (9-61)||(14323702-14323754)
chr7 (9-61)||(18115221-18115273)
chr7 (9-61)||(18141789-18141841)
[»] scaffold0059 (2 HSPs)
scaffold0059 (7-144)||(68010-68159)
scaffold0059 (7-144)||(76115-76264)
[»] chr4 (8 HSPs)
chr4 (11-116)||(14022359-14022475)
chr4 (9-64)||(1658671-1658726)
chr4 (9-144)||(3077847-3077994)
chr4 (9-64)||(49526458-49526513)
chr4 (9-58)||(18567007-18567056)
chr4 (9-58)||(27812315-27812364)
chr4 (9-64)||(10267307-10267362)
chr4 (9-61)||(18108777-18108829)
[»] scaffold0053 (1 HSPs)
scaffold0053 (9-132)||(45147-45282)
[»] scaffold0239 (1 HSPs)
scaffold0239 (9-132)||(16907-17042)
[»] chr5 (5 HSPs)
chr5 (7-64)||(40932963-40933020)
chr5 (9-70)||(20024440-20024501)
chr5 (9-64)||(16832195-16832250)
chr5 (7-58)||(10624389-10624440)
chr5 (9-64)||(18156230-18156285)
[»] scaffold0063 (1 HSPs)
scaffold0063 (9-64)||(70721-70776)
[»] scaffold0216 (1 HSPs)
scaffold0216 (13-132)||(19884-20015)
[»] scaffold0151 (1 HSPs)
scaffold0151 (9-70)||(14133-14194)
[»] scaffold0016 (2 HSPs)
scaffold0016 (64-144)||(200269-200350)
scaffold0016 (13-57)||(200207-200251)
[»] scaffold0012 (1 HSPs)
scaffold0012 (9-70)||(250070-250131)
[»] chr6 (8 HSPs)
chr6 (7-64)||(11794185-11794242)
chr6 (7-64)||(26460581-26460638)
chr6 (9-61)||(23431997-23432049)
chr6 (9-64)||(16597241-16597296)
chr6 (9-64)||(18258100-18258155)
chr6 (9-50)||(23491037-23491078)
chr6 (9-50)||(23496635-23496676)
chr6 (9-61)||(16310097-16310149)
[»] scaffold0190 (1 HSPs)
scaffold0190 (9-64)||(7505-7560)
[»] scaffold0168 (1 HSPs)
scaffold0168 (9-64)||(1399-1454)
[»] scaffold0096 (1 HSPs)
scaffold0096 (9-56)||(36407-36454)
[»] scaffold0770 (1 HSPs)
scaffold0770 (9-70)||(3689-3750)
[»] scaffold0029 (1 HSPs)
scaffold0029 (9-70)||(101993-102054)
[»] scaffold0516 (1 HSPs)
scaffold0516 (9-61)||(11269-11321)
[»] scaffold0323 (1 HSPs)
scaffold0323 (9-61)||(4599-4651)
[»] scaffold0130 (2 HSPs)
scaffold0130 (9-61)||(28525-28577)
scaffold0130 (9-61)||(39942-39994)
[»] scaffold0101 (2 HSPs)
scaffold0101 (9-61)||(50902-50954)
scaffold0101 (9-61)||(46264-46316)
[»] scaffold0100 (1 HSPs)
scaffold0100 (9-116)||(9066-9184)
[»] scaffold0417 (1 HSPs)
scaffold0417 (9-64)||(1382-1437)
[»] scaffold0297 (1 HSPs)
scaffold0297 (9-64)||(8775-8830)
[»] scaffold0740 (1 HSPs)
scaffold0740 (9-61)||(5715-5767)
[»] scaffold0241 (1 HSPs)
scaffold0241 (9-41)||(25164-25196)
[»] scaffold0040 (1 HSPs)
scaffold0040 (9-61)||(41418-41470)
[»] scaffold0026 (2 HSPs)
scaffold0026 (9-61)||(118363-118415)
scaffold0026 (9-61)||(142213-142265)
[»] scaffold0014 (1 HSPs)
scaffold0014 (64-116)||(7574-7626)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 199 - 556
Target Start/End: Original strand, 31818380 - 31818739
Alignment:
Q  199 acacatgtcctatatatattggatcacaagataagattttccttatattcaaggaatatgaatattttcaatattgaaatacaaataagcaaattagtaa 298  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31818380 acacatgtcctatatatcttggatcacaagataagattttccttatattcaaggaatatgaatattttcaatattgaaatacaaataagcaaattagtaa 31818479  T
Q  299 taggcttatatataggaaatgaaatcattaattagtgnnnnnnnnnn-aaaccaccttagttagagtctttgacactcaaatgacttctatagaatacct 397  Q
    ||||||||||||||||||| |||||||||||||||||           |||||||||||||||||||||||||||||||| ||| |||||||||||| ||    
T  31818480 taggcttatatataggaaaggaaatcattaattagtgtttttttttggaaaccaccttagttagagtctttgacactcaagtgatttctatagaatatct 31818579  T
Q  398 ttataa-ttttcatcatttggaccgactatatcagatgtttataggttgcaacttaaaactctttacgtctatataaaaatgtattttgtgaaggtcaaa 496  Q
     ||||| |||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31818580 ctataagttttcatcatttagaccgacttaatcagatgtttataggttgcaacttaaaactctttacatctatataaaaatgtattttgtgaaggtcaaa 31818679  T
Q  497 caatagttctcgttaataagctaaacactacctaacctattagattaggggaggcatata 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31818680 caatagttctcgttaataagctaaacactacctaacctattagattaggggaggcatata 31818739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 31817999 - 31818148
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaa-----------ttcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||| |||||||||   |||||||||||||||||||||           ||||||||||||||| ||||||||||||||||    
T  31817999 ataaacgagtcacaagttgcaatatatgaatatgagtaccaacttacattcagtcaatgcaatttcaattcatttctttaaatgtttttgcaatttactt 31818098  T
Q  96 gtttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  31818099 gtttattttgagtaattcatttactttcattcgcatcatacttcgattgg 31818148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 16664732 - 16664583
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||           |||||||||||||| | ||||||||||||||    
T  16664732 ataaacgagtcacaagttgcaatgtatgaatctatgtaccaacctacattcagtcaatgcaatttaagttcatttctttaaatgtctttgcaatttactt 16664633  T
Q  96 gtttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||||| ||||||| |||| |||| || |||||||||    
T  16664632 gtttattttgagtaattcatttacttttattcgcatcgtacttcgattgg 16664583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 22881028 - 22881177
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaatt-----------catttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||            ||||||||||||| | ||||||||||||||    
T  22881028 ataaacgagtcacaagttgcaatgtatgaatatgtgtaccaagttacattcactcaatgaaatttaaatgcatttctttaaatgtctttgcaatttactt 22881127  T
Q  96 gtttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||||| |||| || |||| ||||||| |||||||||    
T  22881128 gtttattttgagtaattcatttacctttattcgcatcatacttcgattgg 22881177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 23815042 - 23814987
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  23815042 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 23814987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 23829890 - 23829835
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  23829890 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 23829835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 20524223 - 20524272
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattca 58  Q
    ||||||||||||||||||||||||||||| | | |||||| |||||||||    
T  20524223 aaacgagtcacaagttgcaatgtatgaatttttgtaccaatttacattca 20524272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 37130488 - 37130537
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattca 58  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||||    
T  37130488 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattca 37130537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 22648660 - 22648712
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  22648660 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 22648712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 22593827 - 22593882
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||| ||||| |||||    
T  22593827 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttatattcaatcaat 22593882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 23769433 - 23769378
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||| ||||||||||| || | |||||| ||||||||| |||||    
T  23769433 aaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaat 23769378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 23803412 - 23803357
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||| ||||||||||||||||||| || | |||||| ||||||||| |||||    
T  23803412 aaacgagtaacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 23803357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 28567766 - 28567715
Alignment:
Q  13 gagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  28567766 gagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 28567715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 34827675 - 34827620
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||| |||||||||| || | |||||| ||||||||| |||||    
T  34827675 aaacgagtcacaagttgtaatgtatgaacatgtgtaccaatttacattcaatcaat 34827620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 21905021 - 21904967
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||| ||||||||||| || | |||||| ||||||||| |||||    
T  21905021 aacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaat 21904967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 25349324 - 25349270
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||| ||||||||||||||| |||| | |||||| ||||||||| |||||    
T  25349324 aacgagtcataagttgcaatgtatggatatgtgtaccaatttacattcaatcaat 25349270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 23203913 - 23203865
Alignment:
Q  13 gagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  23203913 gagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 23203865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 23615161 - 23615121
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaac 49  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  23615161 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaac 23615121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 41438894 - 41438748
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgtt 98  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||           ||||||||||| | |||||||||||||||||    
T  41438894 aacgagtcacaagttgcaatgtatgaatatgtataccaacttacatccagtcaatgcaatttcaatacatttctttaaatgtctttgcaatttacttgtt 41438795  T
Q  99 tattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||||||    
T  41438794 tattttgagtaattcatttacttttattcgcatcatacttcgattgg 41438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 29708216 - 29708070
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgtt 98  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||| ||||| ||           ||||||||||| |||||||||||||||||||    
T  29708216 aacgagtcacaagttgcaatgtatgaatatgtgcaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtttttgcaatttacttgtt 29708117  T
Q  99 tattttgagtaa-ttcattactttcattcccatcatatttcgattgg 144  Q
    |||||||||||| ||  |||||||||||| |||| || |||||||||    
T  29708116 tattttgagtaatttgtttactttcattcgcatcgtacttcgattgg 29708070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 18735456 - 18735574
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaa-----------ttcatttctttaaatatttttgcaatttacttgt 97  Q
    ||||||||||||||||||||||||||||||| | ||||||  |||||||| ||||           |||||||  |||||| | ||||||||||||||||    
T  18735456 aaacgagtcacaagttgcaatgtatgaatatctgtaccaatctacattcaatcaatgcaatttaagttcattttcttaaatgtctttgcaatttacttgt 18735555  T
Q  98 ttattttgagtaattcatt 116  Q
    || ||||||| ||||||||    
T  18735556 ttcttttgagcaattcatt 18735574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 27818276 - 27818331
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  27818276 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 27818331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 15337399 - 15337453
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  15337399 aacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 15337453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 15426464 - 15426518
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  15426464 aacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 15426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 15517768 - 15517822
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  15517768 aacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 15517822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 22698149 - 22698088
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattcattt 70  Q
    |||||||||||||||||||||||||||| || | |||||| ||||| ||| ||||| |||||    
T  22698149 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacagtcaatcaatacattt 22698088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17426146 - 17426094
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  17426146 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 17426094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 20193204 - 20193152
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  20193204 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 20193152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 15911799 - 15911854
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||| ||||||||||| || | |||||| ||||||||| |||||    
T  15911799 aaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaat 15911854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 33389 - 33240
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| ||           |||||||||||   ||||||||||||||    
T  33389 ataaacgagtcacaagttggaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttaaatacatttctttaaatgcctttgcaatttactt 33290  T
Q  96 gtttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  33289 gtttattttgagtaattcatttactttcattcgcatcatacttcgattgg 33240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 23511694 - 23511843
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc-----------aattcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||           ||| |||||||||||||   ||||||||||||||    
T  23511694 ataaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttaaatacatttctttaaatgcctttgcaatttactt 23511793  T
Q  96 gtttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||| |||||    
T  23511794 gtttattttgagtaattcatttactttcattcgcatcatacttcaattgg 23511843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 21076648 - 21076793
Alignment:
Q  11 acgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgttt 99  Q
    |||||||| |||||||||||||||||||| | |||||||||||||||| ||||| ||           ||||||||||| | ||||||||||||||||||    
T  21076648 acgagtcataagttgcaatgtatgaatatgtgtaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtctttgcaatttacttgttt 21076747  T
Q  100 attttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||||    
T  21076748 attttgagtaattcatttactttcattcgcatcatacttcgattgg 21076793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 21137739 - 21137888
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcag-----------tcaattcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||           ||||| |||||||||||||   ||||||||||||||    
T  21137739 ataaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttcaatacatttctttaaatgcctttgcaatttactt 21137838  T
Q  96 gtttattttgagtaattcat-tactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||| || ||||||||||  ||||||| |||||||||    
T  21137839 gtttattttgagtaatttatctactttcatttgcatcatacttcgattgg 21137888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 4229909 - 4229853
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaa 63  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  4229909 ataaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacattcaatcaa 4229853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 50826530 - 50826582
Alignment:
Q  64 ttcatttctttaaatatttttgcaatttacttgtttattttgagtaattcatt 116  Q
    ||||||||||||||| | |||||||||||||||||| |||| |||||||||||    
T  50826530 ttcatttctttaaatgtctttgcaatttacttgtttcttttaagtaattcatt 50826582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 2603525 - 2603414
Alignment:
Q  16 tcacaagttgcaatgtatgaatatatataccaacttacattcagtcaa-----------ttcatttctttaaatatttttgcaatttacttgtttatttt 104  Q
    ||||||||||||||||||||| || |||||||| ||||||||| ||||           |||||||  |||||| | ||| |||||||||||||| ||||    
T  2603525 tcacaagttgcaatgtatgaacatgtataccaatttacattcaatcaatgcaatttaagttcattttcttaaatgtctttacaatttacttgtttctttt 2603426  T
Q  105 gagtaattcatt 116  Q
    ||||||||||||    
T  2603425 gagtaattcatt 2603414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 21168393 - 21168338
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||||| | || |||  |||||||| |||||    
T  21168393 aaacgagtcacaagttgcaatgtatgaatatgtgtagcaatctacattcaatcaat 21168338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 27902109 - 27902160
Alignment:
Q  13 gagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  27902109 gagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 27902160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 21310878 - 21310930
Alignment:
Q  60 tcaattcatttctttaaatatttttgcaatttacttgtttattttgagtaatt 112  Q
    ||||| ||||||||||||| | |||||||||||||| || ||||| |||||||    
T  21310878 tcaatacatttctttaaatgtctttgcaatttacttattcattttaagtaatt 21310930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 22086486 - 22086538
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    ||||||||||||||||| || |||||||||| | ||||||||| |||| ||||    
T  22086486 aaacgagtcacaagttgaaaagtatgaatatgtgtaccaactttcattaagtc 22086538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 116490 - 116636
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgtt 98  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||           ||||||||||| | |||||||||||||||||    
T  116490 aacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacattcagtcaatgcaatttcaatacatttctttaaatgtctttgcaatttacttgtt 116589  T
Q  99 tattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    |||||||||||||||| |||||||| ||| || |||| |||||||||    
T  116590 tattttgagtaattcatttactttcgttcgcaccatacttcgattgg 116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 13023962 - 13024107
Alignment:
Q  11 acgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgttt 99  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||           ||||||||||| |||||| | |||||||||||    
T  13023962 acgagtcacaagttgcaatgtatgaatatgtgtaccaacttacattcaatcaattcaatttcaatacatttctttaaatgtttttgtagtttacttgttt 13024061  T
Q  100 attttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||| ||| |||||||||||| ||||||| |||||||||    
T  13024062 attttgagtaactcatttactttcattcgcatcatacttcgattgg 13024107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 22445017 - 22445155
Alignment:
Q  18 acaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttacttgtttattttga 106  Q
    |||||||||||||||||||| | | |||||||||||||| |||||||           |||||||||||||| | |||||||||||||||||||||||||    
T  22445017 acaagttgcaatgtatgaatttgtgtaccaacttacatttagtcaatccaatttaagttcatttctttaaatgtctttgcaatttacttgtttattttga 22445116  T
Q  107 gtaattcatt-actttcattcccatcatatttcgattgg 144  Q
    |||||||||| ||||| |||| ||||||| |||||||||    
T  22445117 gtaattcattcacttttattcgcatcatacttcgattgg 22445155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 12844617 - 12844471
Alignment:
Q  10 aacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgtt 98  Q
    ||||||| ||||||||||||||||||| || || ||||||||||||||| ||||| ||           ||||||||||| | |||||||||||||||||    
T  12844617 aacgagttacaagttgcaatgtatgaaaatgtacaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtctttgcaatttacttgtt 12844518  T
Q  99 tattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    |||||| ||||||||| ||| |||||||| |||  || |||||||||    
T  12844517 tattttaagtaattcatttattttcattcgcattgtacttcgattgg 12844471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 12021522 - 12021407
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcag-----------tcaattcatttctttaaatatttttgcaatttacttgt 97  Q
    |||| |||||||||||||||||||||||||| |  ||||||||||||||||           ||||| ||||||||||||| | ||||||||||||||||    
T  12021522 aaacaagtcacaagttgcaatgtatgaatatgtgcaccaacttacattcagtcatggcaatttcaatacatttctttaaatgtctttgcaatttacttgt 12021423  T
Q  98 ttattttgagtaattc 113  Q
    | ||||| ||||||||    
T  12021422 tcattttaagtaattc 12021407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 132500 - 132445
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  132500 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 132445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 12492004 - 12492059
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || |  ||||||||  |||||||||||    
T  12492004 aaacgagtcacaagttgcaatgtatgaacatgtgcaccaacttttattcagtcaat 12492059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 43135631 - 43135576
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||| |||||||||| || | |||||| ||||||||| |||||    
T  43135631 aaacgagtcacaagttgtaatgtatgaacatgtgtaccaatttacattcaatcaat 43135576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 7341508 - 7341456
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  7341508 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 7341456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 7396254 - 7396202
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  7396254 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 7396202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10792587 - 10792639
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  10792587 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 10792639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 11887346 - 11887398
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  11887346 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 11887398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 14683195 - 14683143
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  14683195 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 14683143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 107498 - 107647
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||           |||||||||||||| | |||||||||| |||    
T  107498 ataaacgagtcacaagttgcaatgtatgaatctgtgtaccaacttacattccgtcaatgcaatttaagttcatttctttaaatgtctttgcaatttgctt 107597  T
Q  96 gtttattttgagtaattcatt-actttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| |||||||||    
T  107598 gtttattttgagtaatttattcacttttattcgcatcatacttcgattgg 107647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 129242 - 129358
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaa-----------ttcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||| | | || ||||||||||||||||||           ||||||||| ||||| | ||||||||||||||    
T  129242 ataaacgagtcacaagttgcaatgtatgaatctgtgtaacaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttactt 129341  T
Q  96 gtttattttgagtaatt 112  Q
    |||||||||||||||||    
T  129342 gtttattttgagtaatt 129358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 129871 - 130003
Alignment:
Q  23 ttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttacttgtttattttgagtaat 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||           |||||||| ||||| | ||||||||||||||||||||||||||||||    
T  129871 ttgcaatgtatgaatttgtatatcaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttacttgtttattttgagtaat 129970  T
Q  112 tcatt-actttcattcccatcatatttcgattg 143  Q
    | ||| ||||| |||| ||||||| ||||||||    
T  129971 ttattcacttttattcgcatcatacttcgattg 130003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 144702 - 144834
Alignment:
Q  23 ttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttacttgtttattttgagtaat 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||           |||||||| ||||| | ||||||||||||||||||||||||||||||    
T  144702 ttgcaatgtatgaatctgtatatcaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttacttgtttattttgagtaat 144801  T
Q  112 tcatt-actttcattcccatcatatttcgattg 143  Q
    | ||| ||||| |||| ||||||| ||||||||    
T  144802 ttattcacttttattcgcatcatacttcgattg 144834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 136041 - 136121
Alignment:
Q  64 ttcatttctttaaatatttttgcaatttacttgtttattttgagtaattcatt-actttcattcccatcatatttcgattg 143  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||| ||||||||    
T  136041 ttcatttctctaaatgtctttgcaatttacttgtttattttgagtaatttattcacttttattcacatcatacttcgattg 136121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 18752739 - 18752882
Alignment:
Q  13 gagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttacttgtttat 101  Q
    ||||||||||||||||||||||||| | | |||||||||||||||| |||||           |||||||||||||| | |||||||||||||||||| |    
T  18752739 gagtcacaagttgcaatgtatgaatctgtgtaccaacttacattcaatcaatgcaatttaagttcatttctttaaatgtctttgcaatttacttgtttct 18752838  T
Q  102 tttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||| ||||||| |||  |||||||||||||||||    
T  18752839 tttgagtaattcatttacttttatttgcatcatatttcgattgg 18752882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 18160141 - 18160089
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  18160141 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 18160089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 18174911 - 18174859
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  18174911 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 18174859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 44277716 - 44277664
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  44277716 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 44277664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 10827845 - 10827790
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||| | | |||||| | ||||||| |||||    
T  10827845 aaacgagtcacaagttgcaatgtatgaatctgtgtaccaattcacattcaatcaat 10827790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 10864198 - 10864253
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||| | | |||||| | ||||||| |||||    
T  10864198 aaacgagtcacaagttgcaatgtatgaatctgtgtaccaattcacattcaatcaat 10864253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 11021637 - 11021582
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||| | | |||||| | ||||||| |||||    
T  11021637 aaacgagtcacaagttgcaatgtatgaatctgtgtaccaattcacattcaatcaat 11021582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 40342902 - 40342855
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacatt 56  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||    
T  40342902 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacatt 40342855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 11989383 - 11989331
Alignment:
Q  60 tcaattcatttctttaaatatttttgcaatttacttgtttattttgagtaatt 112  Q
    ||||| ||||||||||||| | |||||||||||||| || ||||| |||||||    
T  11989383 tcaatacatttctttaaatgtctttgcaatttacttattcattttaagtaatt 11989331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 14323754 - 14323702
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  14323754 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 14323702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 18115273 - 18115221
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  18115273 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 18115221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 18141841 - 18141789
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  18141841 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 18141789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 68159 - 68010
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||           |||||||| ||||| | |||||||||| |||    
T  68159 ataaacgagtcacaagttgcaatgtatgaatctgtgtactaacttacattcagtcaatgcaatttaagttcatttctctaaatgtctttgcaatttgctt 68060  T
Q  96 gtttattttgagtaattcatt-actttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| |||||||||    
T  68059 gtttattttgagtaatttattcacttttattcgcatcatacttcgattgg 68010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 76264 - 76115
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttactt 95  Q
    ||||||||||||||||||||||||||||||| | | ||| | ||||||||| ||||||           |||||||| ||||| | |||||||||| |||    
T  76264 ataaacgagtcacaagttgcaatgtatgaatctgtgtactatcttacattctgtcaatgcaatttaagttcatttctctaaatgtctttgcaatttgctt 76165  T
Q  96 gtttattttgagtaattcatt-actttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| |||||||||    
T  76164 gtttattttgagtaatttattcacttttattcgcatcatacttcgattgg 76115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 14022475 - 14022359
Alignment:
Q  11 acgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgttt 99  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||           ||||||||| |||  |||||||||||||||||    
T  14022475 acgagtcacaagttgcaatgtatgaatatgtgtactaacttacattcaatcaatgcaatttcaatacatttctttaagtatcattgcaatttacttgttt 14022376  T
Q  100 attttgagtaattcatt 116  Q
    |||||||||||||||||    
T  14022375 attttgagtaattcatt 14022359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 1658671 - 1658726
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  1658671 aaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacattcaatcaat 1658726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 3077994 - 3077847
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat-----------tcatttctttaaatatttttgcaatttacttgt 97  Q
    ||||||| ||||||||| ||||||||||| | | |||||||||||||||| |||||           |||||||||||||| | ||||||||||||||||    
T  3077994 aaacgagccacaagttgtaatgtatgaatctgtgtaccaacttacattcaatcaatgcaatttaagttcatttctttaaatgtctttgcaatttacttgt 3077895  T
Q  98 ttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    || |||| ||| ||||| ||||||| | |  ||||||| |||||||||    
T  3077894 ttcttttaagtgattcatttacttttaattgcatcatacttcgattgg 3077847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 49526513 - 49526458
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  49526513 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 49526458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 18567056 - 18567007
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattca 58  Q
    |||||||||||||||||||||| |||||||| | |||||| |||||||||    
T  18567056 aaacgagtcacaagttgcaatgaatgaatatgtgtaccaatttacattca 18567007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 27812364 - 27812315
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattca 58  Q
    |||| |||||||||||||||||||||||||| | |||||| |||||||||    
T  27812364 aaacaagtcacaagttgcaatgtatgaatatgtctaccaatttacattca 27812315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 10267307 - 10267362
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||| ||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  10267307 aaacgaatcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 10267362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 18108777 - 18108829
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  18108777 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 18108829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 45282 - 45147
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattca-----------gtcaattcatttctttaaatatttttgcaatttacttgt 97  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||            ||||| ||||||||||||| | ||||||||||||||||    
T  45282 aaacgagtcacaagttgcaatgtatgaatatgtgcaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgtctttgcaatttacttgt 45183  T
Q  98 ttattttgagtaattca-ttactttcattcccatca 132  Q
    | ||||| ||||||||| ||||||| |||| |||||    
T  45182 tcatttttagtaattcatttacttttattcgcatca 45147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 17042 - 16907
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattca-----------tttctttaaatatttttgcaatttacttgt 97  Q
    |||||||||||||||||||||||||||| || |  ||||||||||||||| ||||| ||           ||||||||||| | ||||||||||||||||    
T  17042 aaacgagtcacaagttgcaatgtatgaacatgtgcaccaacttacattcaatcaatgcaatttcactacatttctttaaatgtctttgcaatttacttgt 16943  T
Q  98 ttattttgagtaattca-ttactttcattcccatca 132  Q
    | ||||| ||||||||| ||||||| |||| |||||    
T  16942 tcattttaagtaattcatttacttttattcgcatca 16907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 40932963 - 40933020
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||    
T  40932963 ataaacgagtcacaagttgcaatgtatgaatatgtgtaccaatttacattcaatcaat 40933020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 20024501 - 20024440
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattcattt 70  Q
    ||||||||||||||||||||||||||||||| | ||||||  |||||||| ||||| |||||    
T  20024501 aaacgagtcacaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgcattt 20024440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 16832195 - 16832250
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  16832195 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 16832250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 10624389 - 10624440
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattca 58  Q
    ||||| |||||||||||||||||||||||| || | |||||| |||||||||    
T  10624389 ataaatgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattca 10624440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 18156230 - 18156285
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    ||||||||||||||||||||||||||||| | | |||||| ||| ||||| |||||    
T  18156230 aaacgagtcacaagttgcaatgtatgaatctgtgtaccaatttatattcaatcaat 18156285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 70721 - 70776
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||||||||||    
T  70721 aaacgagtcacaagttgcaatgtatgaacatgtttaccaatttacattcagtcaat 70776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 20015 - 19884
Alignment:
Q  13 gagtcacaagttgcaatgtatgaatatatataccaacttacattca-----------gtcaattcatttctttaaatatttttgcaatttacttgtttat 101  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||            ||||| |||||||||||||   ||||||||||| ||||| ||    
T  20015 gagtcacaagttgcaatgtatgaatagatgcaccaacttacattcaatcaatgcaatttcaatacatttctttaaatgcctttgcaatttatttgttcat 19916  T
Q  102 tttgagtaattca-ttactttcattcccatca 132  Q
    ||| ||||||||| |||||||||||| |||||    
T  19915 tttaagtaattcatttactttcattcgcatca 19884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 14194 - 14133
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattcattt 70  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||| ||||    
T  14194 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaatttattt 14133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 200269 - 200350
Alignment:
Q  64 ttcatttctttaaatatttttgcaatttacttgtttattttgagtaattca-ttactttcattcccatcatatttcgattgg 144  Q
    ||||||||||||||  | |||||||||||||||||| |||||||||||||| ||||||| |||  ||||||| || ||||||    
T  200269 ttcatttctttaaacgtctttgcaatttacttgtttcttttgagtaattcatttacttttatttgcatcatactttgattgg 200350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 200207 - 200251
Alignment:
Q  13 gagtcacaagttgcaatgtatgaatatatataccaacttacattc 57  Q
    ||||||||||||||||||||||||| | | |||||||||| ||||    
T  200207 gagtcacaagttgcaatgtatgaatctgtgtaccaacttatattc 200251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 250131 - 250070
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattcattt 70  Q
    ||||||||||||||||||||||||||||| | | |||||| ||||||||| ||||| |||||    
T  250131 aaacgagtcacaagttgcaatgtatgaatttgtgtaccaatttacattcaatcaatacattt 250070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 11794185 - 11794242
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||| ||||||||||||||||||||| || | |||||||||||||||| |||||    
T  11794185 ataaacgaatcacaagttgcaatgtatgaacatgtgtaccaacttacattcaatcaat 11794242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26460638 - 26460581
Alignment:
Q  7 ataaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  26460638 ataaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 26460581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 23431997 - 23432049
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  23431997 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 23432049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 16597296 - 16597241
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||| ||||||||||||||||||| || | |||||| ||||||||| |||||    
T  16597296 aaacgagtgacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 16597241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 18258155 - 18258100
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | || ||| ||||||||| |||||    
T  18258155 aaacgagtcacaagttgcaatgtatgaacatgtgtatcaatttacattcaatcaat 18258100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 23491037 - 23491078
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaact 50  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  23491037 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaact 23491078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 23496635 - 23496676
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaact 50  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  23496635 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaact 23496676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16310149 - 16310097
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||| ||||    
T  16310149 aaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 16310097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 7505 - 7560
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | || ||||||||||||| |||||    
T  7505 aaacgagtcacaagttgcaatgtatgaacatgtgtatcaacttacattcaatcaat 7560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 1454 - 1399
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||| |||||    
T  1454 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaatttacattcaatcaat 1399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 36407 - 36454
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacatt 56  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||    
T  36407 aaacgagtcacaagttgcaatgtatgaacatgtgtaccaacttacatt 36454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 3750 - 3689
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattcattt 70  Q
    |||||||||| |||||||||||||||||||| | ||||||  |||||||| ||||| |||||    
T  3750 aaacgagtcaaaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgcattt 3689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 102054 - 101993
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaattcattt 70  Q
    |||||||||| |||||||||||||||||||| | ||||||  |||||||| ||||| |||||    
T  102054 aaacgagtcaaaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgcattt 101993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 11321 - 11269
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  11321 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 11269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 4599 - 4651
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  4599 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 4651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 28577 - 28525
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  28577 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 28525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 39942 - 39994
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||| | |||||||||| | ||||||||| |||| ||||    
T  39942 aaacgagtcacaagttgcgaagtatgaatatgtgtaccaactttcattaagtc 39994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 50954 - 50902
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| | ||||||||| |||| ||||    
T  50954 aaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaagtc 50902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 46316 - 46264
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| ||||| |||| | ||||||||| |||| ||||    
T  46316 aaacgagtcacaagttgcaaagtatgtatatgtgtaccaactttcattaagtc 46264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 9066 - 9184
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaa-----------ttcatttctttaaatatttttgcaatttacttgt 97  Q
    |||| |||||||||||||||||||||||||| | ||||||  |||||||| ||||           |||||||  |||||| | ||||||||||||||||    
T  9066 aaacaagtcacaagttgcaatgtatgaatatgtgtaccaatctacattcaatcaatgcaatttaagttcattttcttaaatgtctttgcaatttacttgt 9165  T
Q  98 ttattttgagtaattcatt 116  Q
    || ||||||| ||||||||    
T  9166 ttcttttgagcaattcatt 9184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 1382 - 1437
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||||||||||||||  || | |||||| ||||||||| |||||    
T  1382 aaacgagtcacaagttgcaatgtatgatcatgtgtaccaatttacattcaatcaat 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 8830 - 8775
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtcaat 64  Q
    |||||||||||||||| ||||||||||| || | |||||| ||||||||| |||||    
T  8830 aaacgagtcacaagttacaatgtatgaacatgtgtaccaatttacattcaatcaat 8775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 5715 - 5767
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    ||||||||||||||||| || |||||||||| | ||||||||| |||| ||||    
T  5715 aaacgagtcacaagttgtaaagtatgaatatgtgtaccaactttcattaagtc 5767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 25164 - 25196
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatat 41  Q
    |||||||||||||||||||| ||||||||||||    
T  25164 aaacgagtcacaagttgcaaagtatgaatatat 25196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 41418 - 41470
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| |  |||||||| |||| ||||    
T  41418 aaacgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaagtc 41470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 118415 - 118363
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| |  |||||||| |||| ||||    
T  118415 aaacgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaagtc 118363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 142265 - 142213
Alignment:
Q  9 aaacgagtcacaagttgcaatgtatgaatatatataccaacttacattcagtc 61  Q
    |||||||||||||||||||| |||||||||| |  |||||||| |||| ||||    
T  142265 aaacgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaagtc 142213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 7574 - 7626
Alignment:
Q  64 ttcatttctttaaatatttttgcaatttacttgtttattttgagtaattcatt 116  Q
    |||||||  |||||| | ||| |||||||||||||| ||||||||||||||||    
T  7574 ttcattttcttaaatgtctttacaatttacttgtttcttttgagtaattcatt 7626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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