View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5129-Insertion-5 (Length: 292)

Name: NF5129-Insertion-5
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5129-Insertion-5
NF5129-Insertion-5
[»] chr1 (7 HSPs)
chr1 (7-286)||(32925087-32925367)
chr1 (123-288)||(15199475-15199641)
chr1 (123-286)||(15218565-15218729)
chr1 (198-285)||(36776770-36776857)
chr1 (198-288)||(159008-159098)
chr1 (130-167)||(46137130-46137167)
chr1 (123-167)||(36776900-36776944)
[»] chr2 (4 HSPs)
chr2 (123-286)||(22834042-22834206)
chr2 (207-288)||(18857133-18857214)
chr2 (130-167)||(29807435-29807472)
chr2 (220-280)||(29807687-29807747)
[»] chr7 (4 HSPs)
chr7 (136-286)||(23256990-23257141)
chr7 (123-167)||(19160127-19160171)
chr7 (123-167)||(20759526-20759570)
chr7 (123-167)||(26177459-26177503)
[»] chr6 (2 HSPs)
chr6 (198-285)||(21273240-21273327)
chr6 (198-273)||(23667210-23667285)
[»] chr3 (3 HSPs)
chr3 (197-288)||(3570117-3570208)
chr3 (198-273)||(51464749-51464824)
chr3 (131-167)||(3570251-3570287)
[»] chr5 (2 HSPs)
chr5 (198-285)||(21345342-21345429)
chr5 (198-237)||(25802880-25802919)
[»] chr4 (1 HSPs)
chr4 (198-288)||(21279111-21279201)
[»] chr8 (1 HSPs)
chr8 (123-167)||(25820434-25820478)
[»] scaffold0065 (1 HSPs)
scaffold0065 (123-163)||(42253-42293)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 32925367 - 32925087
Alignment:
Q  7 actatgtttctggtccacaaagttaaatatgtacatttttcctacatgattggaatcaaaatcataaacagaataaatgaagttataagctgtgtgaata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32925367 actatgtttctggtccacaaagttaaatatgtacatttttcctacatgattggaatcaaaatcataaacagaataaatgaagttataagctgtgtgaata 32925268  T
Q  107 tactcacggatttgtcctcaggatcctcttccaccgtttaaataaatattattttttggaagctttagatcatacg-taccggataatacgtgtggttca 205  Q
    |||| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||| ||||||||||||||||||    
T  32925267 tactgacggatttttcctaagggtcctcttccaccgtttaaataaatattattttttggaagttttaggtcatgcgataccagataatacgtgtggttca 32925168  T
Q  206 ttatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttc 286  Q
     ||||||| | |||| ||||||||||||||||||| ||||   |||||| || | |||||||||||||| |||||||||||    
T  32925167 ctatgttgtcttcttatttgttggcggattttgcaagggacgggaatggaatgcttaattatagatttccttagccatttc 32925087  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 288
Target Start/End: Complemental strand, 15199641 - 15199475
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaagctttagatcatacg-taccggataatacgtgtggttcattatgttgccatcttc 221  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||  | | || | || |||||||||||||||||| || |||||| |||||    
T  15199641 ctcagggtcctcttccaccgtttaaatgtatattattttttggaagctttagggcttgcgatgccagataatacgtgtggttcactacgttgccttcttc 15199542  T
Q  222 tttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttcgg 288  Q
    ||||||||||||||||||| |||| | ||||| ||| |||||||||||||||| |||||||||||||    
T  15199541 tttgttggcggattttgcaagggacatgaatgagatgcctaattatagatttccttagccatttcgg 15199475  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 123 - 286
Target Start/End: Complemental strand, 15218729 - 15218565
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaagctttagatcatacg-taccggataatacgtgtggttcattatgttgccatcttc 221  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||| ||||||  ||| || |||| ||||||| |||||||||| |  |||||| |||||    
T  15218729 ctcagggtcctcttccaccgtttaaatgaatattattttttagaacctttagggcatgcgataccagataatatgtgtggttcactgcgttgccttcttc 15218630  T
Q  222 tttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttc 286  Q
    |||||||||||||||| || |||| | ||||| ||| |||||||||||||||| |||||||||||    
T  15218629 tttgttggcggattttccaagggacaggaatgagatgcctaattatagatttccttagccatttc 15218565  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 36776857 - 36776770
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccattt 285  Q
    |||||||| || |||||| ||||||||||||||||||||| |  |||| | |||||| || ||||||||| |||||| ||||| ||||    
T  36776857 gtggttcactacgttgccttcttctttgttggcggattttactagggaaaggaatggtatgcctaattatcgatttccttagctattt 36776770  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 159098 - 159008
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttcgg 288  Q
    |||||| | ||||||| | ||||||||||| |||||||||||  |||| | |||||| || |||||| ||||||||| ||||| |||||||    
T  159098 gtggtttactatgttgtcttcttctttgttagcggattttgctagggaaaggaatggaatgcctaataatagatttccttagctatttcgg 159008  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 46137130 - 46137167
Alignment:
Q  130 tcctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||||||||||||||||| |||||||||||||||||    
T  46137130 tcctcttccaccgtttaaatgaatattattttttggaa 46137167  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 36776944 - 36776900
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||    
T  36776944 ctcagggtcctcttcctctgtttaaataaatattattttttggaa 36776900  T

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Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 123 - 286
Target Start/End: Complemental strand, 22834206 - 22834042
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaagctttagatcatacg-taccggataatacgtgtggttcattatgttgccatcttc 221  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||| || | || |||||||||||||||||| ||||||| | |||||    
T  22834206 ctcagggtcctcttccactgtttaaatgaatattattttttggaagctttaggtcatgcgatgccagataatacgtgtggttcactatgttgtcttcttc 22834107  T
Q  222 tttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttc 286  Q
    ||||||||||||||||||| |||| |   ||||||| |||||||||||||||| |||||||||||    
T  22834106 tttgttggcggattttgcaagggacagagatgggatgcctaattatagatttccttagccatttc 22834042  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 18857133 - 18857214
Alignment:
Q  207 tatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttcgg 288  Q
    ||||||||| |||||||||||| | ||||||||  |||| | ||||| ||| |||||||||||||||| ||||| |||||||    
T  18857133 tatgttgccttcttctttgttgacagattttgctagggacaggaatgagatgcctaattatagatttccttagctatttcgg 18857214  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 29807435 - 29807472
Alignment:
Q  130 tcctcttccaccgtttaaataaatattattttttggaa 167  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  29807435 tcctcttccaccgcttaaataaatattatttattggaa 29807472  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 29807687 - 29807747
Alignment:
Q  220 tctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagc 280  Q
    ||||||||||||||||||||  |||| | ||||||| |  ||||||||||||||| |||||    
T  29807687 tctttgttggcggattttgctagggacatgaatgggttgtctaattatagatttccttagc 29807747  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 23257141 - 23256990
Alignment:
Q  136 tccaccgtttaaataaatattattttttggaagctttagatcatacg-taccggataatacgtgtggttcattatgttgccatcttctttgttggcggat 234  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||  |||||||||||| |||| ||||||||| ||||||||||| ||||||    
T  23257141 tccaccgtttaaatgaatattattttttggaagctttagatcatgcgataccaaataatacgtgtgcttcactatgttgccttcttctttgtttgcggat 23257042  T
Q  235 tttgcatgggataagaatgggatacctaattatagatttctttagccatttc 286  Q
    |||||| | || | ||||| ||| ||||||||| |||||| ||||| |||||    
T  23257041 tttgcaagagacaggaatgagatgcctaattattgatttccttagctatttc 23256990  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 19160127 - 19160171
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  19160127 ctcagggtcctcttccaccgtttaaataaatattatcttttggaa 19160171  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 20759526 - 20759570
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  20759526 ctcagggtcctcttccaccgtttaaataaatattatcttttggaa 20759570  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 26177459 - 26177503
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||    
T  26177459 ctcagggtcctcttccaccgtttaaatgaatatcattttttggaa 26177503  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 21273240 - 21273327
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccattt 285  Q
    |||||||| |||| |||| ||||||||||||||||||||| |  |||| | |||||||||||||||||||||||||| ||||| ||||    
T  21273240 gtggttcactatgctgccttcttctttgttggcggattttactagggacatgaatgggatacctaattatagatttccttagctattt 21273327  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 23667285 - 23667210
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagattt 273  Q
    |||||||| ||||||||| ||||||||||||||||||||| |  |||| |  |||||||| |||||||||||||||    
T  23667285 gtggttcactatgttgccttcttctttgttggcggattttactagggacagaaatgggatgcctaattatagattt 23667210  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 3570208 - 3570117
Alignment:
Q  197 tgtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttcgg 288  Q
    ||||||||| ||||||||| |||||||||||||| |||||| |  |||| | ||||| ||| |||||||||||||||| ||||| |||||||    
T  3570208 tgtggttcactatgttgccttcttctttgttggcagattttactagggacaggaatgagatgcctaattatagatttccttagctatttcgg 3570117  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 51464824 - 51464749
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagattt 273  Q
    |||||||| ||||||||| ||||||||||||||||||||| |  |||| |  |||||||| |||| ||||||||||    
T  51464824 gtggttcactatgttgccttcttctttgttggcggattttactagggacagaaatgggatgcctatttatagattt 51464749  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 3570287 - 3570251
Alignment:
Q  131 cctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||||| |||||||||| |||||||||||||||||    
T  3570287 cctcttcctccgtttaaatgaatattattttttggaa 3570251  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 21345429 - 21345342
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccattt 285  Q
    |||||||| ||||||||  ||||||||||||||| |||||||  | || | ||||||||| |||||||||||||||| ||||| ||||    
T  21345429 gtggttcactatgttgcattcttctttgttggcgaattttgctagagacatgaatgggatgcctaattatagatttccttagctattt 21345342  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 25802880 - 25802919
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggatttt 237  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  25802880 gtggttcactatgttgccttcttctttgttggcggatttt 25802919  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 21279111 - 21279201
Alignment:
Q  198 gtggttcattatgttgccatcttctttgttggcggattttgcatgggataagaatgggatacctaattatagatttctttagccatttcgg 288  Q
    |||||||| ||||||||| |||||||||||||| |||||| |  |||| || |||| ||| ||||||| |||||||| ||||| |||||||    
T  21279111 gtggttcactatgttgccttcttctttgttggcagatttttctagggacaacaatgagatgcctaattgtagatttccttagctatttcgg 21279201  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 25820434 - 25820478
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattattttttggaa 167  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||    
T  25820434 ctcagggtcctcttccaccgtttaaatgaatataattttttggaa 25820478  T

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Target: scaffold0065 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 42253 - 42293
Alignment:
Q  123 ctcaggatcctcttccaccgtttaaataaatattatttttt 163  Q
    |||||| |||||||||||||||||||| ||||| |||||||    
T  42253 ctcagggtcctcttccaccgtttaaatgaatatcatttttt 42293  T

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