View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5129-Insertion-7 (Length: 213)

Name: NF5129-Insertion-7
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5129-Insertion-7
NF5129-Insertion-7
[»] chr4 (11 HSPs)
chr4 (7-213)||(54147759-54147965)
chr4 (114-191)||(16870777-16870858)
chr4 (164-212)||(16871279-16871327)
chr4 (115-181)||(54147744-54147809)
chr4 (72-112)||(16870798-16870838)
chr4 (112-152)||(24225506-24225546)
chr4 (115-170)||(16870685-16870738)
chr4 (73-133)||(16870705-16870766)
chr4 (112-151)||(42265453-42265492)
chr4 (115-152)||(42265426-42265462)
chr4 (32-60)||(7259335-7259363)
[»] chr5 (12 HSPs)
chr5 (57-175)||(24136927-24137043)
chr5 (13-144)||(24136943-24137075)
chr5 (115-181)||(11335364-11335430)
chr5 (155-210)||(24137213-24137268)
chr5 (155-208)||(9512063-9512116)
chr5 (112-175)||(24136919-24136981)
chr5 (100-152)||(24136876-24136928)
chr5 (114-198)||(24137075-24137163)
chr5 (118-152)||(9511811-9511845)
chr5 (112-174)||(9511836-9511898)
chr5 (57-111)||(11335371-11335425)
chr5 (14-58)||(11335361-11335408)
[»] chr1 (6 HSPs)
chr1 (114-183)||(15629922-15629990)
chr1 (115-175)||(15630022-15630081)
chr1 (57-133)||(15630001-15630076)
chr1 (164-212)||(15629787-15629835)
chr1 (112-152)||(19825117-19825157)
chr1 (120-152)||(15630075-15630107)
[»] chr2 (15 HSPs)
chr2 (57-133)||(1173447-1173523)
chr2 (57-144)||(1173343-1173430)
chr2 (114-174)||(1173283-1173343)
chr2 (115-175)||(1173468-1173528)
chr2 (164-212)||(8986555-8986603)
chr2 (114-171)||(1173379-1173436)
chr2 (112-183)||(38584074-38584145)
chr2 (170-213)||(1173171-1173214)
chr2 (53-111)||(1173283-1173341)
chr2 (162-198)||(32290827-32290863)
chr2 (112-152)||(38584202-38584242)
chr2 (57-112)||(38584082-38584137)
chr2 (110-152)||(32290556-32290598)
chr2 (115-191)||(8986247-8986327)
chr2 (112-152)||(38584136-38584176)
[»] chr8 (12 HSPs)
chr8 (73-152)||(20242015-20242093)
chr8 (73-152)||(20250974-20251052)
chr8 (73-144)||(20242107-20242177)
chr8 (114-175)||(20242177-20242238)
chr8 (73-121)||(20242199-20242247)
chr8 (115-175)||(20241995-20242053)
chr8 (115-175)||(20242087-20242145)
chr8 (115-175)||(20250922-20250980)
chr8 (115-175)||(20251014-20251072)
chr8 (73-121)||(20250913-20250960)
chr8 (29-59)||(20242331-20242361)
chr8 (29-59)||(20250799-20250829)
[»] chr7 (23 HSPs)
chr7 (73-152)||(44338338-44338416)
chr7 (57-144)||(15623052-15623139)
chr7 (53-144)||(15623145-15623236)
chr7 (73-144)||(44338430-44338500)
chr7 (164-212)||(46963499-46963547)
chr7 (155-212)||(21813995-21814052)
chr7 (114-175)||(44338500-44338561)
chr7 (73-121)||(44338522-44338570)
chr7 (114-175)||(15623084-15623145)
chr7 (76-144)||(15623238-15623306)
chr7 (115-175)||(44338318-44338376)
chr7 (115-175)||(44338410-44338468)
chr7 (115-152)||(21813850-21813887)
chr7 (115-191)||(46963778-46963856)
chr7 (114-160)||(15623192-15623238)
chr7 (115-158)||(11828572-11828615)
chr7 (114-157)||(15623009-15623052)
chr7 (29-59)||(26403153-26403183)
chr7 (29-59)||(44338654-44338684)
chr7 (112-177)||(21813878-21813943)
chr7 (156-197)||(24487013-24487054)
chr7 (112-149)||(24487088-24487125)
chr7 (112-152)||(11828609-11828649)
[»] chr6 (15 HSPs)
chr6 (57-151)||(21862276-21862371)
chr6 (52-144)||(28063589-28063679)
chr6 (114-175)||(21862270-21862332)
chr6 (72-133)||(13167536-13167597)
chr6 (164-212)||(9291076-9291124)
chr6 (73-144)||(21862102-21862173)
chr6 (162-213)||(28063455-28063506)
chr6 (116-175)||(28063621-28063678)
chr6 (126-175)||(13167527-13167576)
chr6 (57-133)||(21862179-21862259)
chr6 (74-132)||(13167445-13167502)
chr6 (114-160)||(21862173-21862219)
chr6 (115-172)||(21862082-21862137)
chr6 (115-155)||(10741529-10741569)
chr6 (114-174)||(28063529-28063589)
[»] chr3 (11 HSPs)
chr3 (57-144)||(46692012-46692099)
chr3 (154-212)||(50295901-50295959)
chr3 (114-175)||(46692044-46692105)
chr3 (115-181)||(42530767-42530831)
chr3 (162-212)||(42531001-42531051)
chr3 (162-212)||(46691878-46691928)
chr3 (101-152)||(42530722-42530773)
chr3 (114-183)||(46691942-46692012)
chr3 (53-109)||(50295620-50295677)
chr3 (13-59)||(42530787-42530835)
chr3 (112-144)||(50295554-50295586)
[»] scaffold0499 (1 HSPs)
scaffold0499 (116-145)||(7304-7333)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 54147759 - 54147965
Alignment:
Q  7 agtttggtgctcacaatttggtttct--cccccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctccccctttt 104  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  54147759 agtttggtgctcacaatttggtttctttcccccttttgattcttctgattgattgtttggtgggtcgagtgctcataatttggtttcttctcccc-tttt 54147857  T
Q  105 gattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgcacttctcccacttttgatgatt 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54147858 gattcttcaagttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttttgattcttctgattgcacttctcccacttttgatgatt 54147956  T
Q  205 ctttggttg 213  Q
    |||||||||    
T  54147957 ctttggttg 54147965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 16870777 - 16870858
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc----tgattgcacttctccc 191  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||    ||||||||||||||||    
T  16870777 atttggttgtttcgtgagtcgagtgctcataatttggtttcttctccccttttttattcttctcattgattgcacttctccc 16870858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 16871279 - 16871327
Alignment:
Q  164 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16871279 ttttgattcttctaattgcacttctcccacttttgatgattctttggtt 16871327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 54147744 - 54147809
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 181  Q
    ||||||||||||||||||   ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  54147744 tttggttgtttggtgagtttggtgctcacaatttggtttctt-tcccccttttgattcttctgattg 54147809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 16870798 - 16870838
Alignment:
Q  72 agtgctcataatttggtttcttctcccccttttgattcttc 112  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  16870798 agtgctcataatttggtttcttctccccttttttattcttc 16870838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 24225506 - 24225546
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  24225506 caatttggttgtttggtgaatcgagtgcttacaatttggtt 24225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 16870685 - 16870738
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgat 170  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  16870685 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc-ccttttgat 16870738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 16870705 - 16870766
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttg--attcttcaatttggttgtttggtgagtc 133  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||| || |||||||    
T  16870705 gtgctcacaatttggtttcttct-ccccttttgatattcttcaatttggttgattagtgagtc 16870766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 42265453 - 42265492
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggt 151  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  42265453 caatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 42265426 - 42265462
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42265426 tttggttgtttggtgagtcgagt-ctcacaatttggtt 42265462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 7259363 - 7259335
Alignment:
Q  32 tcccccttttgattcttttgattgattgt 60  Q
    |||||||||||||||||||||||||||||    
T  7259363 tcccccttttgattcttttgattgattgt 7259335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 24136927 - 24137043
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttctt 156  Q
    |||||||||| ||  |||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24136927 ttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttcaatttggttgtttggtgagtctagttctcacaatttggtttctt 24137025  T
Q  157 ctcctccttttgattcttc 175  Q
    |||| || |||||||||||    
T  24137026 ctcc-ccctttgattcttc 24137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 24136943 - 24137075
Alignment:
Q  13 gtgctcacaatttggtttct--cccccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattct 110  Q
    ||||||||||||| ||||||  ||||||| ||||||||    ||| |||||||||| ||  ||| |||| ||||||||||||||||||||||| ||||||    
T  24136943 gtgctcacaattttgtttcttccccccttctgattcttcaatttggttgtttggtgagtctagttctcacaatttggtttcttctcccccttt-gattct 24137041  T
Q  111 tcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    ||||||||||||||||||||||| ||| ||||||    
T  24137042 tcaatttggttgtttggtgagtctagttctcaca 24137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 11335430 - 11335364
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 181  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  11335430 tttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattcttttgattg 11335364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 24137213 - 24137268
Alignment:
Q  155 ttctcctccttttgattcttctgattgcacttctcccacttttgatgattctttgg 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24137213 ttctcccccttttgattcttctgattgcacttctcccacttttgatgattctttgg 24137268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 9512063 - 9512116
Alignment:
Q  155 ttctcctccttttgattcttctgattgcacttctcccacttttgatgattcttt 208  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9512063 ttctcccccttttgattcttttgattgcacttctcccacttttgatgattcttt 9512116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 24136919 - 24136981
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||    
T  24136919 caatttggttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttc 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 24136876 - 24136928
Alignment:
Q  100 cttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  24136876 cttttgattcttcaatttggttgtttggtgagccgacttctcacaatttggtt 24136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 24137075 - 24137163
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttct-cctccttttgattcttct----gattgcacttctcccacttttg 198  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| |||||||    ||||||||||||||| ||||||    
T  24137075 atttggttgtttggtgagttgagtgctcacaatttggttt-ttctccccccttttggttcttctaatagattgcacttctcccccttttg 24137163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 9511811 - 9511845
Alignment:
Q  118 ggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    |||||||||||||||||||||||||||||||||||    
T  9511811 ggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 9511836 - 9511898
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 174  Q
    |||||||||||||||||||||  | | ||||||||||| |||||| ||| |||||||||||||    
T  9511836 caatttggttgtttggtgagttaaatactcacaatttgatttcttatcccccttttgattctt 9511898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 11335425 - 11335371
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 111  Q
    |||||||||| ||  | |||||| |||||||||||||||||||||||||||||||    
T  11335425 ttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt 11335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 11335408 - 11335361
Alignment:
Q  14 tgctcacaatttggtttct---cccccttttgattcttttgattgatt 58  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||    
T  11335408 tgctcacaatttggtttcttctcccccttttgattcttttgattgatt 11335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 15629990 - 15629922
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  15629990 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttatgattcttctgattgca 15629922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 15630081 - 15630022
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15630081 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttttgattcttc 15630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 15630076 - 15630001
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 133  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15630076 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttagtgagtc 15630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 15629835 - 15629787
Alignment:
Q  164 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  15629835 ttttgattcttctgattgcacttctccaacttttgatgattttttggtt 15629787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 19825157 - 19825117
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19825157 caatttggttgtttggcgagtcgagtgctcacaatttggtt 19825117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 15630107 - 15630075
Alignment:
Q  120 ttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||||||||||||||||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggtt 15630075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 1173523 - 1173447
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 133  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1173523 ttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttcaatttggttgtttggtgagtc 1173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 1173430 - 1173343
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||||||||| ||  ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  1173430 ttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgattattcaatttggttgtttggtgagtctagttctcaca 1173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 1173343 - 1173283
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 174  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1173343 atttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 1173528 - 1173468
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  1173528 tttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttc 1173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 8986555 - 8986603
Alignment:
Q  164 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8986555 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 8986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 1173436 - 1173379
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgatt 171  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  1173436 atttggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 38584145 - 38584074
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 183  Q
    |||||||||||||||||||||  | ||||||||||||| ||| |||||| ||||||||||||||| ||||||    
T  38584145 caatttggttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttctaattgca 38584074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 1173214 - 1173171
Alignment:
Q  170 ttcttctgattgcacttctcccacttttgatgattctttggttg 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  1173214 ttcttctgattgcacttcttccacttttgatgattctttggttg 1173171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 1173341 - 1173283
Alignment:
Q  53 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 111  Q
    |||||||||| ||| ||  |||||||| |||||||||||||||||||||||||||||||    
T  1173341 ttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 32290827 - 32290863
Alignment:
Q  162 ccttttgattcttctgattgcacttctcccacttttg 198  Q
    |||||||||||||||||||||||||||||||||||||    
T  32290827 ccttttgattcttctgattgcacttctcccacttttg 32290863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 38584242 - 38584202
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  38584242 caatttgcttgtttggtgagtcgagtgctcacattttggtt 38584202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 38584137 - 38584082
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttc 112  Q
    |||||||||| || || |||||| |||||| ||| |||||||||||||||||||||    
T  38584137 ttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttc 38584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 32290556 - 32290598
Alignment:
Q  110 ttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||    
T  32290556 ttcaatttgtttgtttggtgggtcaagtgctcacaatttggtt 32290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 8986247 - 8986327
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttc-ttctcctccttttgattcttc----tgattgcacttctccc 191  Q
    ||||||||||||||||| |  ||||||||||||||||||| |||||| | |||| |||||||    ||||||||||||||||    
T  8986247 tttggttgtttggtgag-catgtgctcacaatttggtttctttctccccttttttattcttctcattgattgcacttctccc 8986327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 38584176 - 38584136
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  38584176 caatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 20242015 - 20242093
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20242015 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 20251052 - 20250974
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20251052 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20250974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 20242107 - 20242177
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  20242107 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 20242177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 20242177 - 20242238
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  20242177 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattcttc 20242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 20242199 - 20242247
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 121  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20242199 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 20242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 20241995 - 20242053
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20241995 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 20242087 - 20242145
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20242087 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20242145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 20250980 - 20250922
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20250980 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20250922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 20251072 - 20251014
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20251072 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 20250960 - 20250913
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 121  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20250960 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtt 20250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 20242331 - 20242361
Alignment:
Q  29 ttctcccccttttgattcttttgattgattg 59  Q
    |||||||||||||||||||||||||||||||    
T  20242331 ttctcccccttttgattcttttgattgattg 20242361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 20250829 - 20250799
Alignment:
Q  29 ttctcccccttttgattcttttgattgattg 59  Q
    |||||||||||||||||||||||||||||||    
T  20250829 ttctcccccttttgattcttttgattgattg 20250799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 44338338 - 44338416
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  44338338 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 44338416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 15623139 - 15623052
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||||||||| ||  |||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||    
T  15623139 ttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttcaatttggttgtttggtgagtctagttctcaca 15623052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 15623236 - 15623145
Alignment:
Q  53 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||||||||||||| ||  |||||||| ||||| |||||||||||||||   ||||||||||||||||||||||||||||| ||| ||||||    
T  15623236 ttgattgtttggtgagttgagtgctcacaattttgtttcttctccccctaccgattcttcaatttggttgtttggtgagtctagttctcaca 15623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 44338430 - 44338500
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44338430 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 44338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 46963547 - 46963499
Alignment:
Q  164 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46963547 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 46963499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 21813995 - 21814052
Alignment:
Q  155 ttctcctccttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  21813995 ttctcccccttttgattgttctaattgcacttctcccacttttgatgattctttggtt 21814052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 44338500 - 44338561
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  44338500 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattcttc 44338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 44338522 - 44338570
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 121  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44338522 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 15623145 - 15623084
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| |||  |||||||||    
T  15623145 atttggttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttc 15623084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 15623306 - 15623238
Alignment:
Q  76 ctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||| ||||||||||||||||||| |  || ||||||||||||||||||||||||||| ||| ||||||    
T  15623306 ctcacaatttggtttcttctccccgtactggttcttcaatttggttgtttggtgagtctagttctcaca 15623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 44338318 - 44338376
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  44338318 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 44338410 - 44338468
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  44338410 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 44338468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 21813850 - 21813887
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21813850 tttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 46963856 - 46963778
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc----tgattgcacttctccc 191  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||| |||||||    ||||||||||||||||    
T  46963856 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc-cctttttattcttctcattgattgcacttctccc 46963778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 15623238 - 15623192
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 160  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  15623238 atttgattgtttggtgagttgagtgctcacaattttgtttcttctcc 15623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 11828615 - 11828572
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttct 158  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  11828615 tttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 15623052 - 15623009
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttc 157  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  15623052 atttggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 26403153 - 26403183
Alignment:
Q  29 ttctcccccttttgattcttttgattgattg 59  Q
    |||||||||||||||||||||||||||||||    
T  26403153 ttctcccccttttgattcttttgattgattg 26403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 44338654 - 44338684
Alignment:
Q  29 ttctcccccttttgattcttttgattgattg 59  Q
    |||||||||||||||||||||||||||||||    
T  44338654 ttctcccccttttgattcttttgattgattg 44338684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 21813878 - 21813943
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctg 177  Q
    ||||||||||| |||||||    ||| | ||||||||||||| |||||| ||||||||||||||||    
T  21813878 caatttggttgcttggtgaaataagtacccacaatttggttttttctcccccttttgattcttctg 21813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 24487054 - 24487013
Alignment:
Q  156 tctcctccttttgattcttctgattgcacttctcccactttt 197  Q
    ||||||||| ||||||||| |||||||||||||| |||||||    
T  24487054 tctcctcctattgattcttttgattgcacttctctcactttt 24487013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 24487125 - 24487088
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttg 149  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24487125 caatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 11828649 - 11828609
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    |||||||||||| |||||||||| ||||||||| |||||||    
T  11828649 caatttggttgtctggtgagtcgggtgctcacattttggtt 11828609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 21862276 - 21862371
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc-ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggt 151  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  21862276 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttcaatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 28063679 - 28063589
Alignment:
Q  52 attgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||| |||||||||| || | ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||    
T  28063679 attggttgtttggtgagtcaggtgctcacaatttggtttcttctccc--ttttgattcttcaatttggttgtttggtgagtctagttctcaca 28063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 21862270 - 21862332
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctcc-ttttgattcttc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  21862270 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttc 21862332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 13167536 - 13167597
Alignment:
Q  72 agtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 133  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13167536 agtgctcacagtttggtttcttctcccccttctgattcttcaatttggttgtttggtgagtc 13167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 9291124 - 9291076
Alignment:
Q  164 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291124 ttttgattcttctgattgcacttctcccacttttgatgattctttggtt 9291076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 21862102 - 21862173
Alignment:
Q  73 gtgctcataatttggtttcttctcccccttttgattc-ttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  21862102 gtgctcacaatttggtttcttctcccc-ttttgattcgttcaatttggttgtttggtgagtctagttctcaca 21862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 28063506 - 28063455
Alignment:
Q  162 ccttttgattcttctgattgcacttctcccacttttgatgattctttggttg 213  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  28063506 ccttttgatccttctgattgcatttctcccacttttgatgattctttggttg 28063455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 28063678 - 28063621
Alignment:
Q  116 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctc--ccttttgattcttc 28063621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 13167527 - 13167576
Alignment:
Q  126 ggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  13167527 ggtgagtcgagtgctcacagtttggtttcttctcccccttctgattcttc 13167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 21862179 - 21862259
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc----ttttgattcttcaatttggttgtttggtgagtc 133  Q
    |||||||||| ||  ||||||||  |||||||||| ||||||||    || ||||||||||||||||||||||||||||||    
T  21862179 ttgtttggtgagtcgagtgctcaatatttggtttcctctcccccccccttctgattcttcaatttggttgtttggtgagtc 21862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 13167445 - 13167502
Alignment:
Q  74 tgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagt 132  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  13167445 tgctcacaatttggtgtcttctcccc-ttttggttcttcaatttggttgtgtggtgagt 13167502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 21862173 - 21862219
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 160  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  21862173 atttggttgtttggtgagtcgagtgctcaatatttggtttcctctcc 21862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 21862082 - 21862137
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattc 172  Q
    |||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||    
T  21862082 tttggttgtttgttgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattc 21862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 10741529 - 10741569
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttct 155  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggtttct 10741569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 28063589 - 28063529
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 174  Q
    ||||||||||||||| ||| || | ||| ||||||| ||||||| || |||||||||||||    
T  28063589 atttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattctt 28063529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 46692099 - 46692012
Alignment:
Q  57 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  46692099 ttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttcaatttggtggtttggtgagtctagttctcaca 46692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 50295901 - 50295959
Alignment:
Q  154 cttctcctccttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50295901 cttctccctcttttgattcttctgattgcacttctcccacttttgatgattctttggtt 50295959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 46692105 - 46692044
Alignment:
Q  114 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 175  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46692105 atttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttc 46692044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 42530767 - 42530831
Alignment:
Q  115 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 181  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42530767 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttctgattg 42530831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 42531001 - 42531051
Alignment:
Q  162 ccttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42531001 ccttttgattcttctgattgcacttctcccacttttaatgattctttggtt 42531051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 46691928 - 46691878
Alignment:
Q  162 ccttttgattcttctgattgcacttctcccacttttgatgattctttggtt 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46691928 ccttttaattcttctgattgcacttctcccacttttgatgattctttggtt 46691878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 42530722 - 42530773
Alignment:
Q  101 ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 152  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  42530722 ttttgattctttaatttggttgtttggtgagtcgagttctcacactttggtt 42530773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 46692012 - 46691942
Alignment:
Q  114 atttggttgttt-ggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 183  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||   | |||| |||||||||||||||    
T  46692012 atttggttgttttggtgagtcgagtgttcacaatttggtttcttctttccttttttattcttctgattgca 46691942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 50295620 - 50295677
Alignment:
Q  53 ttgattgtttggtgggtgaagtgctcataatttggtttcttct-cccccttttgattc 109  Q
    |||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||    
T  50295620 ttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 42530787 - 42530835
Alignment:
Q  13 gtgctcacaatttggtttctcc--cccttttgattcttttgattgattg 59  Q
    |||||||||||||||||||| |  |||||||||||||| ||||||||||    
T  42530787 gtgctcacaatttggtttcttctccccttttgattcttctgattgattg 42530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 50295554 - 50295586
Alignment:
Q  112 caatttggttgtttggtgagtcgagtgctcaca 144  Q
    |||||||||||||| ||||||||||||||||||    
T  50295554 caatttggttgtttcgtgagtcgagtgctcaca 50295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 7333 - 7304
Alignment:
Q  116 ttggttgtttggtgagtcgagtgctcacaa 145  Q
    ||||||||||||||||||||||||||||||    
T  7333 ttggttgtttggtgagtcgagtgctcacaa 7304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University