View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129_high_1 (Length: 490)
Name: NF5129_high_1
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 52590205 - 52590684
Alignment:
| Q |
1 |
atgagtattgccaaacatgtgttgttgctttccttaatctgtgaaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590205 |
atgagtattgccaaacatgtgttgttgctttcctgaatctgtgaaatgatagtctagtaaatcagtactctgtgaagaagaaaccaatgtctgattatta |
52590304 |
T |
|
| Q |
101 |
nnnnnnnnnngtcttttatgaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590305 |
ttattattatgtcttttatgaatggcatcgtcatcagatgtggctaatccatcgctttcacagtttctcaactccaatgcaagagagacattgttgtggc |
52590404 |
T |
|
| Q |
201 |
caccactctccacagttgtaaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590405 |
caccactctccacagttgtaaagttacccaactctgttaaatcatatgtggcagaatcagaatctatttgtgaataaaagccactttttatgctgagcct |
52590504 |
T |
|
| Q |
301 |
ttggttaccatgcaattttccatttccacaatctatcacannnnnnnctacatgttctctagtggaagaggcttgttgtacactatgatcactagcaata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
52590505 |
ttggttaccatgcaattttccatttccacaatctatcacatttttttctacatgttttctagtggaagaggctttttgtacactatgatcactatcaata |
52590604 |
T |
|
| Q |
401 |
atctgtacattgtctcgtgactcttcttccaatttataattaccttggagtgtatttccagatgaaaaattgcagttcat |
480 |
Q |
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|| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590605 |
atttgtacattgtcttgtgactcttcttccaatttattattaccttggagtgtatttccagatgaaaaattgcagttcat |
52590684 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 7301210 - 7301255
Alignment:
| Q |
146 |
aatccatcgctttcacagtttctcaactccaatgcaagagagacat |
191 |
Q |
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|||||||| |||||| |||| ||||||||||||||||| ||||||| |
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| T |
7301210 |
aatccatcactttcagagttcctcaactccaatgcaagtgagacat |
7301255 |
T |
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