View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129_high_3 (Length: 384)
Name: NF5129_high_3
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 31560961 - 31561318
Alignment:
| Q |
18 |
tttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctc |
117 |
Q |
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| T |
31560961 |
tttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgcttt-ttttttctc |
31561059 |
T |
|
| Q |
118 |
cgtcattactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31561060 |
cgtcattactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
31561159 |
T |
|
| Q |
218 |
acaacttgaacaatcacata-tctctagactttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcac |
316 |
Q |
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| T |
31561160 |
acaacttgaacaatcacatattctctagactttgcggattcatccaccttggcttggaggatgtaatcggtctcaaggtgaatttgatcaattcactcac |
31561259 |
T |
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| Q |
317 |
tgatatatgttgttattccaacagttaagagcttctgtatgaaaaactctgaccatatt |
375 |
Q |
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| T |
31561260 |
tgatatatgttgttattccaacagttaagagcttctgtatgaaaaactctcaccatatt |
31561318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 31877754 - 31877529
Alignment:
| Q |
26 |
acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcatta |
125 |
Q |
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| T |
31877754 |
acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctta-------ttttccccatcatta |
31877662 |
T |
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| Q |
126 |
ctggattttggcagtgtcaattactcaatatcagt--------tacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
217 |
Q |
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| T |
31877661 |
atggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgt |
31877562 |
T |
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| Q |
218 |
acaacttgaacaatcacata-tctctagacttt |
249 |
Q |
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| T |
31877561 |
acaacttggacaatcacatattctctagacttt |
31877529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 247 - 375
Target Start/End: Complemental strand, 31877503 - 31877379
Alignment:
| Q |
247 |
tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga |
346 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31877503 |
tttgtggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcacg----gatatatgttgttattccaacagttaaga |
31877408 |
T |
|
| Q |
347 |
gcttctgtatgaaaaactctgaccatatt |
375 |
Q |
| |
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| T |
31877407 |
gcttctgtatgaaaaactctcaccatatt |
31877379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 31558984 - 31559181
Alignment:
| Q |
18 |
tttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctc |
117 |
Q |
| |
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|||||||| ||||||||| ||||||||| |||||||| |||||||||||||| ||| |||| ||||||||||||||||||| ||||||||| | | |
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| T |
31558984 |
tttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaattggccttctattcttgaattatatttgtc-----tttatttttcc-c |
31559077 |
T |
|
| Q |
118 |
cgtcattactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
217 |
Q |
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| T |
31559078 |
catcattactggattttggctgtgcaaattattaaatatcagttacagccctccaacagaagacaatattcactgtcgcggatctatcctcagcctatct |
31559177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 352
Target Start/End: Original strand, 31559304 - 31559405
Alignment:
| Q |
247 |
tttgcggattcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattccaacagttaaga |
346 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
31559304 |
tttgtggattcatccaccttggcttagaggatgtaattggtctcaaggttaatttgatcagt----tcactgatatatgttgttattccaacagttaaga |
31559399 |
T |
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| Q |
347 |
gcttct |
352 |
Q |
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|||||| |
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| T |
31559400 |
gcttct |
31559405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 31556020 - 31556173
Alignment:
| Q |
63 |
aattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagtta |
162 |
Q |
| |
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|||||||| ||| |||| ||||||||||||||||||| ||||||||| | | |||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
31556020 |
aattgaattggcattctattcttgaattatatttgtc-----tttatttttcc--catcattactggattttggcagtgcaaattaatcagtatcagtta |
31556112 |
T |
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| Q |
163 |
cagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaact |
223 |
Q |
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| T |
31556113 |
cagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact |
31556173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 31852320 - 31852379
Alignment:
| Q |
122 |
attactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagac |
181 |
Q |
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| T |
31852320 |
attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagac |
31852379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 31556306 - 31556384
Alignment:
| Q |
256 |
tcatccaccttggcttggaggatgtaatcagtctcaaggtgaatttgatcaattcactcactgatatatgttgttattc |
334 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||| || ||||||||||| || || ||||||||||| ||| |||| |
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| T |
31556306 |
tcatccactttggcttggaggatgtaattggtctcaatgttaatttgatcaagtcgctgactgatatatgatgtaattc |
31556384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 31559210 - 31559280
Alignment:
| Q |
186 |
ttcactgtcgagaatctatcttcaacctatg----tacaacttgaacaatcacata-tctctagactttgc |
251 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
31559210 |
ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctctagactttgc |
31559280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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