View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129_low_10 (Length: 236)
Name: NF5129_low_10
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 39362587 - 39362776
Alignment:
| Q |
34 |
atggaataagctattattgcaaaaatgggtgaatacactaaattatcattaaaaatttatcagccttaacctaaaggggaacatctcaaagagaaaatgt |
133 |
Q |
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| T |
39362587 |
atggaataagctattattgcaaaaatgggtgaatacaccaaattatcattaaaaatttatcagccttaacctaaaggggaacatctcaaagagaaaatgt |
39362686 |
T |
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| Q |
134 |
acctattnnnnnnntcaattttgtaattggtacaagctttgttaaacctctcaaaagaaccacattttgatttttatcgggagaatatat |
223 |
Q |
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| T |
39362687 |
acctattaaaaaaatcaattttgtaattggtacaagctttgttaaacctctcaaaagaaccacattttgatttttatccggagaatatat |
39362776 |
T |
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