View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129_low_5 (Length: 319)
Name: NF5129_low_5
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 48552639 - 48552929
Alignment:
| Q |
18 |
acatggaagtctattgtcttgatcttaggttgttacaagacaaaatactcattagaagaaccagnnnnnnnggttttaaaacaaggttctttccaaaggg |
117 |
Q |
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| T |
48552639 |
acatggaagtctattgtcttgatcttaggttgttacaagacaaaatactcattagaagaaccagaaaaaaaggttttaaaacaaggttctttccaaaggg |
48552738 |
T |
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| Q |
118 |
taagcttatctgatataagcatttctagctctactactcaagctattgaggatctatccatttcactagctggttcaaagctttacacatttacactaga |
217 |
Q |
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| T |
48552739 |
taagcttatctgatataagcatttctagctctactactcaagctattgaggatctttccatttcactagctggttcaaagctttacacatttacacttga |
48552838 |
T |
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| Q |
218 |
ggagctaagagaagcaacacataatttttcaaggagtaatttgcttggtgaaggtggttttggacctgtgtataagggttttgttgatgat |
308 |
Q |
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| T |
48552839 |
ggagctaagagaagcaacacataatttttcaaggagtaatttgcttggtgaaggtggttttggacctgtgtataagggttttgttgatgat |
48552929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 308
Target Start/End: Complemental strand, 3676046 - 3675835
Alignment:
| Q |
94 |
taaaacaaggttctttccaaagggtaagcttatctgatataagcatttctagctctactactcaagctattgaggatctatccatttcactagctggttc |
193 |
Q |
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| T |
3676046 |
taaaacaaggttctttgcaaagactatgtttatcagatataagcaattcaagttcaagt---caagctattgaagatctttcagtttcttttgctggttc |
3675950 |
T |
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| Q |
194 |
aaagctttacacatttacactagaggagctaagagaagcaacacataatttttcaaggagtaatttgcttggtgaaggtggttttggacctgtgtataag |
293 |
Q |
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| T |
3675949 |
taaacttcatgcattcacacttgaggagctaaaagaagcaacacataatttctcatggagtaatatgttaggtgaaggtggatttggacctgtttataag |
3675850 |
T |
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| Q |
294 |
ggttttgttgatgat |
308 |
Q |
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| T |
3675849 |
ggttttgttgatgat |
3675835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 10845991 - 10845941
Alignment:
| Q |
258 |
ttgcttggtgaaggtggttttggacctgtgtataagggttttgttgatgat |
308 |
Q |
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| T |
10845991 |
ttgcttggtgaaggtggttttggaactgttcataagggttattttgatgat |
10845941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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