View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129_low_8 (Length: 250)
Name: NF5129_low_8
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129_low_8 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 24390857 - 24391089
Alignment:
| Q |
18 |
agataggctctatgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacctggccacaagg |
117 |
Q |
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| T |
24390857 |
agataggctctatgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacccggccacaagg |
24390956 |
T |
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| Q |
118 |
aaagtatcggaaaaactagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaacggacacatataaggtagtggagtttt |
217 |
Q |
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| T |
24390957 |
aaagtatcggaaaaattagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaacggacacatataaggtagtggagtttt |
24391056 |
T |
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| Q |
218 |
gtcaaatgagtagagatgtgagagtttttagtt |
250 |
Q |
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| T |
24391057 |
gtcaaatgagtagagatgtgagagtttttagtt |
24391089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 24384650 - 24384870
Alignment:
| Q |
30 |
tgttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacctggccacaaggaaagtatcggaa |
129 |
Q |
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| T |
24384650 |
tgttgttggttgctgcaacggtttggtttgtttgcttggttattataaattagaatattggctttatttctataacccggccacaagaaaagtatctgac |
24384749 |
T |
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| Q |
130 |
aaactagggtcttttacaaggacaaatagatcaaatattgcgtttggttttgataattcaacggacacatataaggtagtggagttttgtcaaatgagta |
229 |
Q |
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| T |
24384750 |
aaattggggtcttttacatggacgtatggatcaaatattgcgttcggatttgataattcaacggacacttataaggtagtgcatatcaataaaatgagta |
24384849 |
T |
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| Q |
230 |
gagatgtgagagtttttagtt |
250 |
Q |
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| T |
24384850 |
gagatgtgaaggtttttagtt |
24384870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 20455944 - 20455979
Alignment:
| Q |
35 |
ttggttcctgcaatggtttggtttgcttgcttggtt |
70 |
Q |
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| T |
20455944 |
ttggttcctgcaatggattggtttgcttgcttggtt |
20455979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 24383593 - 24383679
Alignment:
| Q |
32 |
ttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattagaaaattggttttatttctataacctggccacaagga |
118 |
Q |
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| T |
24383593 |
ttgttggttcctgcaatggtttagtatgcttggttggtaattctgatttagaaagatggttgtatttctatatcccggccacaagga |
24383679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 13888682 - 13888641
Alignment:
| Q |
29 |
atgttgttggttcctgcaatggtttggtttgcttgcttggtt |
70 |
Q |
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| T |
13888682 |
atgttgttggttcctgcaatggattggtctgcttgctcggtt |
13888641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 20456104 - 20456144
Alignment:
| Q |
171 |
gtttggttttgataattcaacggacacatataaggtagtgg |
211 |
Q |
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| T |
20456104 |
gttttgttttgataattcaaccgacacatataaggttgtgg |
20456144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 24956153 - 24956063
Alignment:
| Q |
31 |
gttgttggttcctgcaatggtttggtttgcttgcttggttttaatcaattag--aaaat-tggttttatttctataacctggccacaagga |
118 |
Q |
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| T |
24956153 |
gttgttggttcttgcaatggtttactatgtttgcttggttttaatcatttagacaaaatatggttttatttctataacctagctacaagga |
24956063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 23086143 - 23086180
Alignment:
| Q |
29 |
atgttgttggttcctgcaatggtttggtttgcttgctt |
66 |
Q |
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| T |
23086143 |
atgttgttggttcctgcaatggattgctttgcttgctt |
23086180 |
T |
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