View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5129_low_9 (Length: 239)
Name: NF5129_low_9
Description: NF5129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5129_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 28816520 - 28816635
Alignment:
| Q |
124 |
ccaagtcaacaaattgctagtggtcaagtggtttgacatgattcatcatttgtctgcttcttatcatcagtaattcctactgcatcgttattctcatcat |
223 |
Q |
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| T |
28816520 |
ccaagtcaacaaattgccagtggtcaagtggtttgacatgattcatcatttgtctgcttcttatcatcagtaactcctactgcatcgttattctcatcat |
28816619 |
T |
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| Q |
224 |
atgttgacatcgcctt |
239 |
Q |
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| T |
28816620 |
atgttgacatcgcctt |
28816635 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 28816414 - 28816455
Alignment:
| Q |
18 |
cttccatccatgtttgaccaatctaactgtagaagtgttatt |
59 |
Q |
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| T |
28816414 |
cttccatccatgtttgaccaatctaactgtagaagtgttatt |
28816455 |
T |
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