View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5130-Insertion-1 (Length: 926)
Name: NF5130-Insertion-1
Description: NF5130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5130-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 666
Target Start/End: Original strand, 4031011 - 4031681
Alignment:
| Q |
8 |
cattttgcatctaaaaccattttctataattagaacaaaagtttgtacaagtcacaataaaactacggtatctgtccccactcttgattaaatggacaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031011 |
cattttgcatctaaaaccattttctataattagaacaaaagtttgtacaattcacaataaaactacggtatctgtccccactcttgattaaatggacaag |
4031110 |
T |
|
| Q |
108 |
gttttaaggaaaatgataaatatagcgaaggaaacaatcatgaagcaattgcgaataagtgttattggttgccaatccccaccactgggtgatttcagca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4031111 |
gttttaaggaaaatgataaatatagcgaaggaaacaatcatgaagcaattgcaaataagtgttattggttgccaatccccacgactgggtgatttcagca |
4031210 |
T |
|
| Q |
208 |
aattccaggactgaagtgattcca------------ttttatcaaacacacgcccgcgagatttcacaaaaacaaattcgctatatatagcaaatcctct |
295 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031211 |
aattccaggactgaagtgattccatccgttatgtagttttatcaaacacgcgctcgcgagatttcacaaaaacaaattcgctatatatagcaaatcctct |
4031310 |
T |
|
| Q |
296 |
tcttaaataatagccgtgttgcagttgcaattttttacatgtactaaaattgggttatatacaaattatggtcacaattgcaatcacaaagtaatcgcaa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031311 |
tcttaaataatagccgtgttgcagttgcaattttttatatgtactaaaattgggttatatacaaattatggtcacaattgcaatcacaaagtaatcgcaa |
4031410 |
T |
|
| Q |
396 |
agatataaaataaacattgacgtcgccaccatgatagcagtggtagatcgnnnnnnnnnnnnngaacaaagtggtagatcgtttttctaaaacattgtag |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4031411 |
agatataaaataaacattgacgtcgccaccatgatagcagtggtagatcgtttttgtttttttgaacaaagtggtagatcgtttttctaaaacattgtag |
4031510 |
T |
|
| Q |
496 |
gtagtcttgtttggatcccctagagctgttgtagcataaaacagctctagaggactcgaattcaatgtaggcttctctctcgatatttaaagagtgaatg |
595 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031511 |
gtagtcttgtttggatcccctagagctgttgtagcataaaacagctctagaggactcgaattcaatgtaggcttctctctcgatatttaaagagtgaatg |
4031610 |
T |
|
| Q |
596 |
tacttataattatgataacattaatattttcaagtgcataacaactatcaaaactttgaacctaatttgaa |
666 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031611 |
tacttataattatgataacattaatattttcaagtgcataacaactatcaaaactttgaacctaatttgaa |
4031681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 721 - 906
Target Start/End: Original strand, 4031736 - 4031924
Alignment:
| Q |
721 |
gaactgacctcgaagtgcattgttcaaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcaca |
820 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4031736 |
gaactgacctcgaagtgcattgttcaaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcaca |
4031835 |
T |
|
| Q |
821 |
atattaggatgcttaaccttcccaatgg-ttgcacctcagctac-aactccttatacttctcttctccaccctcccct-atctcctcac |
906 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4031836 |
atattaggatgcttaaccttcccaatggtttgcacctcagctacaaactccttatacttctcttctccaccctcccctaatctcctcac |
4031924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 745 - 846
Target Start/End: Complemental strand, 25882910 - 25882809
Alignment:
| Q |
745 |
caaattgccattggaaataaaatcacttataagaagcttttcatcatgtgcccaataataagctctcaacctcacaatattaggatgcttaaccttccca |
844 |
Q |
| |
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|||||||||||| |||| ||||||||| || | ||||||||||||||| ||||||||||||||||| ||| | |||||||||||||| || || |||||| |
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| T |
25882910 |
caaattgccattagaaacaaaatcactaatcaaaagcttttcatcatgagcccaataataagctcttaacttaacaatattaggatgtttcactttccca |
25882811 |
T |
|
| Q |
845 |
at |
846 |
Q |
| |
|
|| |
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|
| T |
25882810 |
at |
25882809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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